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| author | BonfaceKilz | 2021-05-19 21:44:58 +0300 |
|---|---|---|
| committer | zsloan | 2021-06-18 22:08:04 +0000 |
| commit | a1f48d95f17e939512fa9c276caf39d9f75878f9 (patch) | |
| tree | 7d43d5f32cc4dbc2a83451774fc0b8d683b12f1b /gn3/db | |
| parent | dfafb7c11cb4f57c7e1a61de2ce2f1b62e1018be (diff) | |
| download | genenetwork3-a1f48d95f17e939512fa9c276caf39d9f75878f9.tar.gz | |
db: phenotypes: Put mapping def after dataclass
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/phenotypes.py | 26 |
1 files changed, 13 insertions, 13 deletions
diff --git a/gn3/db/phenotypes.py b/gn3/db/phenotypes.py index 645c0af..be5fb7b 100644 --- a/gn3/db/phenotypes.py +++ b/gn3/db/phenotypes.py @@ -56,20 +56,20 @@ class PublishXRef: comments: Optional[str] = None -# Mapping from the Phenotype dataclass to the actual column names in the +# Mapping from the PublishXRef dataclass to the actual column names in the # database -phenotype_column_mapping = { - "id_": "id", - "pre_pub_description": "Pre_publication_description", - "post_pub_description": "Post_publication_description", - "original_description": "Original_description", - "units": "Units", - "pre_pub_abbrevition": "Pre_publication_abbreviation", - "post_pub_abbreviation": "Post_publication_abbreviation", - "lab_code": "Lab_code", - "submitter": "Submitter", - "owner": "Owner", - "authorized_users": "Authorized_Users", +publish_x_ref_mapping = { + "id_": "Id", + "inbred_set_id": "InbredSetId", + "phenotype_id": "PhenotypeId", + "publication_id": "PublicationId", + "data_id": "DataId", + "mean": "mean", + "locus": "locus", + "lrs": "lrs", + "additive": "additive", + "sequence": "sequence", + "comments": "comments", } |