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author | Muriithi Frederick Muriuki | 2021-08-31 11:16:29 +0300 |
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committer | Muriithi Frederick Muriuki | 2021-08-31 11:16:29 +0300 |
commit | b5e1d1176f1bf4f7c0b68b27beb15e99418f1650 (patch) | |
tree | f158a54b262214ca65394a7dc65a64590533cc0c /gn3/db/traits.py | |
parent | e441509a59c20a051fd5ab94710513f1968a5e02 (diff) | |
download | genenetwork3-b5e1d1176f1bf4f7c0b68b27beb15e99418f1650.tar.gz |
Fix linting errors, minor bugs and reorganise code
* Fix some linting errors and some minor bugs caught by the linter.
Move the `random_string` function to separate module for use in multiple
places in the code.
Diffstat (limited to 'gn3/db/traits.py')
-rw-r--r-- | gn3/db/traits.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/gn3/db/traits.py b/gn3/db/traits.py index ccb101a..bfe887e 100644 --- a/gn3/db/traits.py +++ b/gn3/db/traits.py @@ -1,6 +1,8 @@ """This class contains functions relating to trait data manipulation""" -from gn3.settings import TMPDIR +import os from typing import Any, Dict, Union, Sequence +from gn3.settings import TMPDIR +from gn3.random import random_string from gn3.function_helpers import compose from gn3.db.datasets import retrieve_trait_dataset @@ -669,5 +671,6 @@ def retrieve_trait_data(trait: dict, conn: Any, strainlist: Sequence[str] = tupl return {} def generate_traits_filename(base_path: str = TMPDIR): + """Generate a unique filename for use with generated traits files.""" return "{}/traits_test_file_{}.txt".format( os.path.abspath(base_path), random_string(10)) |