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| author | Frederick Muriuki Muriithi | 2022-02-21 16:23:06 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-02-21 16:23:06 +0300 |
| commit | a35fce27875d9db80dce1976b6f8ee8c00ecfe0a (patch) | |
| tree | 8e8f815a6e3d37348bdb8f253f5ec53f72dc2dbc /gn3/db/datasets.py | |
| parent | c84b07b8c5ac0a42c0fab929c75823b30b548191 (diff) | |
| download | genenetwork3-a35fce27875d9db80dce1976b6f8ee8c00ecfe0a.tar.gz | |
Fix a myriad of linter issues
* Use `with` in place of plain `open`
* Use f-strings in place of `str.format()`
* Remove string interpolation from queries - provide data as query parameters
* other minor fixes
Diffstat (limited to 'gn3/db/datasets.py')
| -rw-r--r-- | gn3/db/datasets.py | 10 |
1 files changed, 2 insertions, 8 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py index 1d6cdf8..b19db53 100644 --- a/gn3/db/datasets.py +++ b/gn3/db/datasets.py @@ -83,8 +83,7 @@ def retrieve_geno_trait_dataset_name( cursor.fetchone())) def retrieve_dataset_name( - trait_type: str, threshold: int, trait_name: str, dataset_name: str, - conn: Any): + trait_type: str, threshold: int, dataset_name: str, conn: Any): """ Retrieve the name of a trait given the trait's name @@ -184,7 +183,6 @@ def retrieve_temp_trait_dataset(): """ Retrieve the dataset that relates to `Temp` traits """ - # pylint: disable=[C0330] return { "searchfield": ["name", "description"], "disfield": ["name", "description"], @@ -198,7 +196,6 @@ def retrieve_geno_trait_dataset(): """ Retrieve the dataset that relates to `Geno` traits """ - # pylint: disable=[C0330] return { "searchfield": ["name", "chr"], "disfield": ["name", "chr", "mb", "source2", "sequence"], @@ -209,7 +206,6 @@ def retrieve_publish_trait_dataset(): """ Retrieve the dataset that relates to `Publish` traits """ - # pylint: disable=[C0330] return { "searchfield": [ "name", "post_publication_description", "abstract", "title", @@ -228,7 +224,6 @@ def retrieve_probeset_trait_dataset(): """ Retrieve the dataset that relates to `ProbeSet` traits """ - # pylint: disable=[C0330] return { "searchfield": [ "name", "description", "probe_target_description", "symbol", @@ -259,8 +254,7 @@ def retrieve_trait_dataset(trait_type, trait, threshold, conn): "dataset_id": None, "dataset_name": trait["db"]["dataset_name"], **retrieve_dataset_name( - trait_type, threshold, trait["trait_name"], - trait["db"]["dataset_name"], conn) + trait_type, threshold, trait["db"]["dataset_name"], conn) } group = retrieve_group_fields( trait_type, trait["trait_name"], dataset_name_info, conn) |