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| author | Muriithi Frederick Muriuki | 2021-08-20 14:10:45 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2021-08-20 14:10:45 +0300 |
| commit | 8b2c776771d2a70613a1e31d6e6671b612cfbafc (patch) | |
| tree | ad7ab6dcd4c43b15afdbe74322fbac76db0f34db /gn3/db/datasets.py | |
| parent | ded960e3d32e4d7ebe590deda27fc47175be73d9 (diff) | |
| download | genenetwork3-8b2c776771d2a70613a1e31d6e6671b612cfbafc.tar.gz | |
Retrieve the strains with valid values
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* gn3/computations/heatmap.py: add function to get strains with values
* tests/unit/computations/test_heatmap.py: new tests
Add function to get the strains whose values are not `None` from the
`trait_data` object passed in.
This migrates
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/heatmap/Heatmap.py#L215-221
into a separate function that can handle that and be tested independently of
any other code.
Diffstat (limited to 'gn3/db/datasets.py')
0 files changed, 0 insertions, 0 deletions