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| author | Frederick Muriuki Muriithi | 2021-11-26 11:54:17 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-29 12:05:16 +0300 |
| commit | 109b233f698a2ce41bb5634f12e966ad02798819 (patch) | |
| tree | af56d973efeb3a864c13b2105f1e8978478410a7 /gn3/db/correlations.py | |
| parent | 0f9247fffc7127bdb3c35492a37706a2db01a26c (diff) | |
| download | genenetwork3-109b233f698a2ce41bb5634f12e966ad02798819.tar.gz | |
Fix bugs in data
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* Process the db_name and db_type values.
* Return data correctly
Diffstat (limited to 'gn3/db/correlations.py')
| -rw-r--r-- | gn3/db/correlations.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index ab4dc2c..401fd91 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -467,6 +467,8 @@ def fetch_all_database_data(# pylint: disable=[R0913, R0914] `web.webqtl.correlation.CorrelationPage.fetchAllDatabaseData` function in GeneNetwork1. """ + db_type = dataset["dataset_type"] + db_name = dataset["dataset_name"] def __build_query__(sample_ids, temp_table): sample_id_columns = ", ".join(f"T{smpl}.value" for smpl in sample_ids) if db_type == "Publish": @@ -551,4 +553,4 @@ def fetch_all_database_data(# pylint: disable=[R0913, R0914] with conn.cursor() as cursor: cursor.execute(f"DROP TEMPORARY TABLE {temp_table}") - return (tuple(item[0] for item in trait_database), trait_database[0][1]) + return (trait_database[0], trait_database[1]) |