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| author | Frederick Muriuki Muriithi | 2021-09-22 07:53:53 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-09-22 07:57:21 +0300 |
| commit | cd7f301688fd9780df1f842f8bd2b7602775ba1f (patch) | |
| tree | cdbcf8077c532c1b5ba7bc0c934932c1a6eb58ab /gn3/computations | |
| parent | 5892ffc7488b0c9cbb4ea08fd5c5f8648e0baea8 (diff) | |
| download | genenetwork3-cd7f301688fd9780df1f842f8bd2b7602775ba1f.tar.gz | |
Fix pylint errors
* Add missing function and module docstrings
* Remove unused imports
* Fix import order
* Rework some code sections to fix issues
* Disable some pylint errors.
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/qtlreaper.py | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py index 377db9b..5d17fed 100644 --- a/gn3/computations/qtlreaper.py +++ b/gn3/computations/qtlreaper.py @@ -87,11 +87,17 @@ def run_reaper( return (output_filename, permu_output_filename) def chromosome_sorter_key_fn(val): + """ + Useful for sorting the chromosomes + """ if isinstance(val, int): return val return ord(val) def organise_reaper_main_results(parsed_results): + """ + Provide the results of running reaper in a format that is easier to use. + """ def __organise_by_chromosome(chr_name, items): chr_items = [item for item in items if item["Chr"] == chr_name] return { @@ -129,12 +135,14 @@ def parse_reaper_main_results(results_file): lines = infile.readlines() def __parse_column_float_value(value): + # pylint: disable=W0702 try: return float(value) except: return value def __parse_column_int_value(value): + # pylint: disable=W0702 try: return int(value) except: |