diff options
| author | zsloan | 2021-08-11 17:36:18 +0000 |
|---|---|---|
| committer | zsloan | 2022-03-22 19:08:01 +0000 |
| commit | 35f0784ee32ccc76416d184ac65e8cad6f7aa490 (patch) | |
| tree | 3b311b0a3db39003c48fd83854bf8a6c02e9d289 /gn3/computations | |
| parent | f494a9462ddb22c117b16be9b4191564b3191c01 (diff) | |
| download | genenetwork3-35f0784ee32ccc76416d184ac65e8cad6f7aa490.tar.gz | |
Removed quotes from beginning and end of chromosome string
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/rqtl.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index 092fac6..36c9fa2 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -119,7 +119,7 @@ def pairscan_for_figure(file_name: str) -> Dict: if i == 0: # Skip first line continue line_items = [item.rstrip('\n') for item in line.split(",")] - chr_list.append(line_items[1]) + chr_list.append(line_items[1][1:-1]) pos_list.append(line_items[2]) figure_data['chr'] = chr_list figure_data['pos'] = pos_list |