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authorPjotr Prins2024-03-24 09:41:55 +0100
committerFrederick Muriuki Muriithi2024-09-12 07:36:54 -0500
commit1264410b515a755eb3a683510ad37125668aa741 (patch)
treeda4edd08758c62a61c5a2203ba1561c718b0305d /gn3/computations
parentbbca8fe96bd2176f300cab8746dace6fd2323320 (diff)
downloadgenenetwork3-1264410b515a755eb3a683510ad37125668aa741.tar.gz
Move assert_paths_exist into fs_helpers
Diffstat (limited to 'gn3/computations')
-rw-r--r--gn3/computations/gemma.py11
1 files changed, 0 insertions, 11 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py
index f97fa6d..2c367ff 100644
--- a/gn3/computations/gemma.py
+++ b/gn3/computations/gemma.py
@@ -41,17 +41,6 @@ def generate_pheno_txt_file(trait_filename: str,
return f"{tmpdir}/gn2/{trait_filename}"
-def assert_paths_exist(paths: ValuesView) -> bool:
- """Given a list of PATHS, throw error if any of them do not exist."""
- for path in paths:
- if not os.path.isfile(path):
- if throw_error:
- raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), path)
- else:
- return False
- return True
-
-
# pylint: disable=R0913
def generate_gemma_cmd(gemma_cmd: str,
output_dir: str,