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| author | Frederick Muriuki Muriithi | 2021-11-23 12:34:44 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-23 12:34:44 +0300 |
| commit | df4ed9183f3efd89d54bba1a144c48475f4b8169 (patch) | |
| tree | 4de20fefe37d9f28030d1e7795888e4676e4438a /gn3/computations | |
| parent | 845ab7696cdd7c7b2cdbd9b2b7f6b0a537d81117 (diff) | |
| download | genenetwork3-df4ed9183f3efd89d54bba1a144c48475f4b8169.tar.gz | |
Fix a myriad of linting errors
* Fix linting errors like:
- Unused variables
- Undeclared variable errors (mostly caused by typos, and wrong names)
- Missing documentation strings for functions
etc.
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/partial_correlations.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index 4bd26a2..f43c4d4 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -200,11 +200,13 @@ def good_dataset_samples_indexes( samples_from_file.index(good) for good in set(samples).intersection(set(samples_from_file)))) -def compute_partial_correlations_fast(# pylint: disable=[R0913, R0914] +def partial_correlations_fast(# pylint: disable=[R0913, R0914] samples, primary_vals, control_vals, database_filename, fetched_correlations, method: str, correlation_type: str) -> Tuple[ float, Tuple[float, ...]]: """ + Computes partial correlation coefficients using data from a CSV file. + This is a partial migration of the `web.webqtl.correlation.PartialCorrDBPage.getPartialCorrelationsFast` function in GeneNetwork1. |