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authorFrederick Muriuki Muriithi2022-08-10 10:52:25 +0300
committerFrederick Muriuki Muriithi2022-08-10 10:52:25 +0300
commita0c3b3ce30d508376b2aa9ddfee4252fca6916ac (patch)
tree8064ae5aa32f5a9ad4ff33b608bb33ae9b8242bb /gn3/computations
parent9917ac266a0f96890075ace28eda3a31408f13b9 (diff)
downloadgenenetwork3-a0c3b3ce30d508376b2aa9ddfee4252fca6916ac.tar.gz
Fix returned value for 'parse_correlation_output'
* Always return dict * Fix internal '__parse_line__' to always have a valid return
Diffstat (limited to 'gn3/computations')
-rw-r--r--gn3/computations/rust_correlation.py11
1 files changed, 6 insertions, 5 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py
index 23fdf42..7176284 100644
--- a/gn3/computations/rust_correlation.py
+++ b/gn3/computations/rust_correlation.py
@@ -80,15 +80,16 @@ def parse_correlation_output(result_file: str,
"tissue_corr": corr_coeff,
"tissue_number": num_overlap,
"tissue_p_val": p_val
- },
- corr_data)
+ })
+
+ return tuple(trait_name, {})
with open(result_file, "r", encoding="utf-8") as file_reader:
- return [
+ return dict([
__parse_line__(line)
- for idx, line in enumerate(file_reader) if idx < top_n]
+ for idx, line in enumerate(file_reader) if idx < top_n])
- return []
+ return {}
def get_samples(all_samples: dict[str, str],