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author | BonfaceKilz | 2021-03-05 12:06:22 +0300 |
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committer | BonfaceKilz | 2021-03-08 21:09:58 +0300 |
commit | 5c56425d51ab6a6b4ffd6ec8f86121bd91ff5e63 (patch) | |
tree | 4bb947a5f3775cdefc492adede41e018694c654d /gn3/computations | |
parent | 4cf5c29a06001577054b3548a24d895cf1911e13 (diff) | |
download | genenetwork3-5c56425d51ab6a6b4ffd6ec8f86121bd91ff5e63.tar.gz |
Apply pep-8 formatting
Began using elpy's format code fn
Diffstat (limited to 'gn3/computations')
-rw-r--r-- | gn3/computations/gemma.py | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 7ee70b0..7b5f91d 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -49,9 +49,7 @@ def do_paths_exist(paths: ValuesView) -> bool: def generate_gemma_computation_cmd( - gemma_cmd: str, - gemma_kwargs: Dict[str, str], - output_file: str, + gemma_cmd: str, gemma_kwargs: Dict[str, str], output_file: str, gemma_wrapper_kwargs: Dict[str, str]) -> Optional[str]: """Create a computation cmd""" geno_filename = gemma_kwargs.get("geno_filename", "") @@ -69,5 +67,4 @@ def generate_gemma_computation_cmd( return compose_gemma_cmd(gemma_wrapper_cmd=gemma_cmd, gemma_wrapper_kwargs=gemma_wrapper_kwargs, gemma_kwargs=_kwargs, - gemma_args=["-gk", ">", - output_file]) + gemma_args=["-gk", ">", output_file]) |