aboutsummaryrefslogtreecommitdiff
path: root/gn3/computations
diff options
context:
space:
mode:
authorBonfaceKilz2021-02-19 17:08:45 +0300
committerBonfaceKilz2021-02-24 14:20:29 +0300
commit18d25f2438dda409fce1a95dc26e63f1b68daaa9 (patch)
treecb998db1f293163bea7596ce32e38a00a9011e83 /gn3/computations
parent96bc4c74f2e5b7a8ffa2bf25bdb6680197fd53ed (diff)
downloadgenenetwork3-18d25f2438dda409fce1a95dc26e63f1b68daaa9.tar.gz
Append random 6 chars to generated phenotype file
Diffstat (limited to 'gn3/computations')
-rw-r--r--gn3/computations/gemma.py9
1 files changed, 9 insertions, 0 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py
index 9a972ba..5bdddc1 100644
--- a/gn3/computations/gemma.py
+++ b/gn3/computations/gemma.py
@@ -1,10 +1,19 @@
"""Procedures related gemma computations"""
+import random
+import string
+
+
+def generate_random_n_string(n_length):
+ """Generate a random string that is N chars long"""
+ return ''.join(random.choice(string.ascii_uppercase + string.digits)
+ for _ in range(n_length))
def generate_pheno_txt_file(trait_filename: str,
values: str,
tmpdir: str = "/tmp") -> str:
"""Given VALUES, and TMPDIR, generate a valide traits file"""
+ trait_filename += f"_{generate_random_n_string(6)}"
with open(f"{tmpdir}/gn2/{trait_filename}", "w") as _file:
for value in values:
if value == "x":