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authorFrederick Muriuki Muriithi2022-05-06 16:43:26 +0300
committerFrederick Muriuki Muriithi2022-05-06 16:43:26 +0300
commit4a9fd93d01b6d4bd9d9880dbf2274b3c7f2de37b (patch)
tree088287b7e1e65399529a405377968905c5017c01 /gn3/computations
parentd04241d0e49a50d9aa775042fffe5a7d8cfaf551 (diff)
downloadgenenetwork3-4a9fd93d01b6d4bd9d9880dbf2274b3c7f2de37b.tar.gz
Fix linting and typing errors
Diffstat (limited to 'gn3/computations')
-rw-r--r--gn3/computations/partial_correlations.py8
1 files changed, 4 insertions, 4 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py
index 07c73db..9b15bcb 100644
--- a/gn3/computations/partial_correlations.py
+++ b/gn3/computations/partial_correlations.py
@@ -555,7 +555,7 @@ def trait_for_output(trait):
     }
     return {key: val for key, val in trait.items() if val is not None}
 
-def check_for_common_errors(
+def check_for_common_errors(# pylint: disable=[R0914]
         conn, primary_trait_name, control_trait_names, threshold):
     """Check for common errors"""
     corr_min_informative = 4
@@ -676,7 +676,7 @@ def partial_correlations_with_target_db(# pylint: disable=[R0913, R0914, R0911]
     check_res = check_for_common_errors(
         conn, primary_trait_name, control_trait_names, threshold)
     if check_res.get("status") == "error":
-        return error_check_results
+        return check_res
 
     primary_trait = check_res["primary_trait"]
     input_trait_geneid = primary_trait.get("geneid", 0)
@@ -822,12 +822,12 @@ def partial_correlations_with_target_traits(
     check_res = check_for_common_errors(
         conn, primary_trait_name, control_trait_names, threshold)
     if check_res.get("status") == "error":
-        return error_check_results
+        return check_res
 
     target_traits = {
         trait["name"]: trait
         for trait in traits_info(conn, threshold, target_trait_names)}
-    target_traits_data = traits_data(conn, target_traits.values())
+    target_traits_data = traits_data(conn, tuple(target_traits.values()))
 
     def __merge(trait, pcorrs):
         return {