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authorAlexander Kabui2021-05-02 23:54:56 +0300
committerAlexander Kabui2021-05-02 23:54:56 +0300
commit9f24b15064bcebcda9cf2164ab7b7e89644e3103 (patch)
tree7c36e4fd5b08720cfd0805352d56ca7cb1fc757b /gn3/computations/traits.py
parentf0ccff2a90d760fc0b268e715e0c6c673ff64e15 (diff)
downloadgenenetwork3-9f24b15064bcebcda9cf2164ab7b7e89644e3103.tar.gz
delete dataset and trait files
Diffstat (limited to 'gn3/computations/traits.py')
-rw-r--r--gn3/computations/traits.py56
1 files changed, 0 insertions, 56 deletions
diff --git a/gn3/computations/traits.py b/gn3/computations/traits.py
deleted file mode 100644
index 1aa2970..0000000
--- a/gn3/computations/traits.py
+++ /dev/null
@@ -1,56 +0,0 @@
-"""module contains all operating related to traits"""
-from gn3.computations.datasets import retrieve_trait_sample_data
-
-
-def fetch_trait(dataset, trait_name: str, database) -> dict:
-    """this method creates a trait by\
-    fetching required data given the\
-    dataset and trait_name"""
-
-    created_trait = {
-        "dataset": dataset,
-        "trait_name": trait_name
-    }
-
-    trait_data = get_trait_sample_data(dataset, trait_name, database)
-
-    created_trait["trait_data"] = trait_data
-
-    return created_trait
-
-
-def get_trait_sample_data(trait_dataset, trait_name, database) -> dict:
-    """first try to fetch the traits sample data from redis if that\
-    try to fetch from the traits dataset redis is only  used for\
-    temp dataset type which is not used in this case """
-
-    sample_results = retrieve_trait_sample_data(
-        trait_dataset, trait_name, database)
-
-    trait_data = {}
-
-    for (name, sample_value, _variance, _numcase, _name2) in sample_results:
-
-        trait_data[name] = sample_value
-    return trait_data
-
-
-def get_trait_info_data(trait_dataset,
-                        trait_name: str,
-                        database_instance,
-                        get_qtl_info: bool = False) -> dict:
-    """given a dataset and trait_name return a dict containing all info\
-    regarding the get trait"""
-
-    _temp_var_holder = (trait_dataset, trait_name,
-                        database_instance, get_qtl_info)
-    trait_info_data = {
-        "description": "",
-        "chr": "",
-        "locus": "",
-        "mb": "",
-        "abbreviation": "",
-        "trait_display_name": ""
-
-    }
-    return trait_info_data