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authorAlexander Kabui2021-05-02 23:54:56 +0300
committerAlexander Kabui2021-05-02 23:54:56 +0300
commit9f24b15064bcebcda9cf2164ab7b7e89644e3103 (patch)
tree7c36e4fd5b08720cfd0805352d56ca7cb1fc757b /gn3/computations/traits.py
parentf0ccff2a90d760fc0b268e715e0c6c673ff64e15 (diff)
downloadgenenetwork3-9f24b15064bcebcda9cf2164ab7b7e89644e3103.tar.gz
delete dataset and trait files
Diffstat (limited to 'gn3/computations/traits.py')
-rw-r--r--gn3/computations/traits.py56
1 files changed, 0 insertions, 56 deletions
diff --git a/gn3/computations/traits.py b/gn3/computations/traits.py
deleted file mode 100644
index 1aa2970..0000000
--- a/gn3/computations/traits.py
+++ /dev/null
@@ -1,56 +0,0 @@
-"""module contains all operating related to traits"""
-from gn3.computations.datasets import retrieve_trait_sample_data
-
-
-def fetch_trait(dataset, trait_name: str, database) -> dict:
- """this method creates a trait by\
- fetching required data given the\
- dataset and trait_name"""
-
- created_trait = {
- "dataset": dataset,
- "trait_name": trait_name
- }
-
- trait_data = get_trait_sample_data(dataset, trait_name, database)
-
- created_trait["trait_data"] = trait_data
-
- return created_trait
-
-
-def get_trait_sample_data(trait_dataset, trait_name, database) -> dict:
- """first try to fetch the traits sample data from redis if that\
- try to fetch from the traits dataset redis is only used for\
- temp dataset type which is not used in this case """
-
- sample_results = retrieve_trait_sample_data(
- trait_dataset, trait_name, database)
-
- trait_data = {}
-
- for (name, sample_value, _variance, _numcase, _name2) in sample_results:
-
- trait_data[name] = sample_value
- return trait_data
-
-
-def get_trait_info_data(trait_dataset,
- trait_name: str,
- database_instance,
- get_qtl_info: bool = False) -> dict:
- """given a dataset and trait_name return a dict containing all info\
- regarding the get trait"""
-
- _temp_var_holder = (trait_dataset, trait_name,
- database_instance, get_qtl_info)
- trait_info_data = {
- "description": "",
- "chr": "",
- "locus": "",
- "mb": "",
- "abbreviation": "",
- "trait_display_name": ""
-
- }
- return trait_info_data