aboutsummaryrefslogtreecommitdiff
path: root/gn3/computations/slink.py
diff options
context:
space:
mode:
authorMuriithi Frederick Muriuki2021-07-21 08:44:09 +0300
committerMuriithi Frederick Muriuki2021-07-21 08:44:09 +0300
commita5d4868c6d2f38d3e6fd0409e08413c3569ce356 (patch)
tree7208485a407dcc515161a498292284da388dfe66 /gn3/computations/slink.py
parent8dc60fd93b9eab9fd655a1f0c23ed038d4ac3eed (diff)
downloadgenenetwork3-a5d4868c6d2f38d3e6fd0409e08413c3569ce356.tar.gz
Extract tests from code in GN1
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/computations/slink.py: Add dummy `nearest' function * tests/unit/computations/test_slink.py: Add some tests This commit adds tests to try and reproduce the working of the `nearest' function in: https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/heatmap/slink.py This commit might not yet have extracted all the expected behaviour of the `nearest' function, and therefore, there is a possibility of a later commit augmenting the work in this commit.
Diffstat (limited to 'gn3/computations/slink.py')
-rw-r--r--gn3/computations/slink.py8
1 files changed, 8 insertions, 0 deletions
diff --git a/gn3/computations/slink.py b/gn3/computations/slink.py
new file mode 100644
index 0000000..bec8597
--- /dev/null
+++ b/gn3/computations/slink.py
@@ -0,0 +1,8 @@
+class LengthError(BaseException):
+ pass
+
+class MirrorError(BaseException):
+ pass
+
+def nearest(lists, i, j):
+ return None