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authorAlexander Kabui2021-09-27 16:09:46 +0300
committerAlexander Kabui2021-09-27 16:09:46 +0300
commit62054d914efb4322fba311f968cb27b662aa6806 (patch)
treef904231c44d87db36e9b794f57373daf6508a11c /gn3/computations/parsers.py
parent6f25b8e2b1d1a34c054d325b1c37b303529b8827 (diff)
parent0cbb6ecde0315b7d6f021cb17406f5e5197e8a05 (diff)
downloadgenenetwork3-62054d914efb4322fba311f968cb27b662aa6806.tar.gz
fix merge conflicts
Diffstat (limited to 'gn3/computations/parsers.py')
-rw-r--r--gn3/computations/parsers.py10
1 files changed, 5 insertions, 5 deletions
diff --git a/gn3/computations/parsers.py b/gn3/computations/parsers.py
index 94387ff..1af35d6 100644
--- a/gn3/computations/parsers.py
+++ b/gn3/computations/parsers.py
@@ -14,7 +14,7 @@ def parse_genofile(file_path: str) -> Tuple[List[str],
         'h': 0,
         'u': None,
     }
-    genotypes, strains = [], []
+    genotypes, samples = [], []
     with open(file_path, "r") as _genofile:
         for line in _genofile:
             line = line.strip()
@@ -22,8 +22,8 @@ def parse_genofile(file_path: str) -> Tuple[List[str],
                 continue
             cells = line.split()
             if line.startswith("Chr"):
-                strains = cells[4:]
-                strains = [strain.lower() for strain in strains]
+                samples = cells[4:]
+                samples = [sample.lower() for sample in samples]
                 continue
             values = [__map.get(value.lower(), None) for value in cells[4:]]
             genotype = {
@@ -32,7 +32,7 @@ def parse_genofile(file_path: str) -> Tuple[List[str],
                 "cm": cells[2],
                 "mb": cells[3],
                 "values":  values,
-                "dicvalues": dict(zip(strains, values)),
+                "dicvalues": dict(zip(samples, values)),
             }
             genotypes.append(genotype)
-        return strains, genotypes
+        return samples, genotypes