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author | BonfaceKilz | 2021-03-10 14:59:25 +0300 |
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committer | BonfaceKilz | 2021-03-10 14:59:25 +0300 |
commit | 8478bc9ee572224fe3b76696de85d1c9a7a89399 (patch) | |
tree | b12542a1404b58a5cf05a9b63c4bbdb3990b394c /gn3/computations/gemma.py | |
parent | 9170e293e896d1d283d3b19d79d673c9a92724d2 (diff) | |
download | genenetwork3-8478bc9ee572224fe3b76696de85d1c9a7a89399.tar.gz |
Fix k-compute command when "loco" is true
Diffstat (limited to 'gn3/computations/gemma.py')
-rw-r--r-- | gn3/computations/gemma.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 172333c..5f9d5a3 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -59,7 +59,7 @@ def generate_gemma_cmd(gemma_cmd: str, _hash = get_hash_of_files( [v for k, v in gemma_kwargs.items() if k in ["g", "p", "a", "c"]]) if chromosomes: # Only reached when calculating k-values - gemma_wrapper_kwargs = {"loco": f"--input {chromosomes}"} + gemma_wrapper_kwargs = {"loco": f"{chromosomes}"} _hash += f"-{generate_hash_of_string(chromosomes)[:6]}" _output_filename = f"{_hash}-output.json" return { |