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authorBonfaceKilz2021-03-05 12:06:22 +0300
committerBonfaceKilz2021-03-08 21:09:58 +0300
commit5c56425d51ab6a6b4ffd6ec8f86121bd91ff5e63 (patch)
tree4bb947a5f3775cdefc492adede41e018694c654d /gn3/computations/gemma.py
parent4cf5c29a06001577054b3548a24d895cf1911e13 (diff)
downloadgenenetwork3-5c56425d51ab6a6b4ffd6ec8f86121bd91ff5e63.tar.gz
Apply pep-8 formatting
Began using elpy's format code fn
Diffstat (limited to 'gn3/computations/gemma.py')
-rw-r--r--gn3/computations/gemma.py7
1 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py
index 7ee70b0..7b5f91d 100644
--- a/gn3/computations/gemma.py
+++ b/gn3/computations/gemma.py
@@ -49,9 +49,7 @@ def do_paths_exist(paths: ValuesView) -> bool:
def generate_gemma_computation_cmd(
- gemma_cmd: str,
- gemma_kwargs: Dict[str, str],
- output_file: str,
+ gemma_cmd: str, gemma_kwargs: Dict[str, str], output_file: str,
gemma_wrapper_kwargs: Dict[str, str]) -> Optional[str]:
"""Create a computation cmd"""
geno_filename = gemma_kwargs.get("geno_filename", "")
@@ -69,5 +67,4 @@ def generate_gemma_computation_cmd(
return compose_gemma_cmd(gemma_wrapper_cmd=gemma_cmd,
gemma_wrapper_kwargs=gemma_wrapper_kwargs,
gemma_kwargs=_kwargs,
- gemma_args=["-gk", ">",
- output_file])
+ gemma_args=["-gk", ">", output_file])