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| author | Alexander Kabui | 2021-11-29 10:23:02 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-12-10 09:58:29 +0300 |
| commit | 3e22ff2d9f21316060893d47f0b014bdaf4ab359 (patch) | |
| tree | 95c691c0fd43b9df01c51fd4652ae97a13e9e98a /gn3/computations/correlations.py | |
| parent | f32eb3269733345da8e0e7149a47ba33be11d611 (diff) | |
| download | genenetwork3-3e22ff2d9f21316060893d47f0b014bdaf4ab359.tar.gz | |
rename variables
Diffstat (limited to 'gn3/computations/correlations.py')
| -rw-r--r-- | gn3/computations/correlations.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index 7c53563..15ee1fa 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -75,17 +75,17 @@ def compute_sample_r_correlation(trait_name, corr_method, trait_vals, """ try: - sanitized_traits_vals, sanitized_target_vals = list( + normalized_traits_vals, normalized_target_vals = list( zip(*list(normalize_values(trait_vals, target_samples_vals)))) - num_overlap = len(sanitized_traits_vals) + num_overlap = len(normalized_traits_vals) except ValueError: return if num_overlap > 5: (corr_coefficient, p_value) =\ - compute_corr_coeff_p_value(primary_values=sanitized_traits_vals, - target_values=sanitized_target_vals, + compute_corr_coeff_p_value(primary_values=normalized_traits_vals, + target_values=normalized_target_vals, corr_method=corr_method) if corr_coefficient is not None and not math.isnan(corr_coefficient): |