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author | Alexander Kabui | 2021-06-14 13:36:40 +0300 |
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committer | Alexander Kabui | 2021-06-14 13:36:40 +0300 |
commit | 57a6af689e85e5cbfe0a825d5b84ed9c451e6ad7 (patch) | |
tree | c151d405b40186d00d99a42aee715f441b25b6fc /gn3/computations/correlations.py | |
parent | 9d6af6049fa73c6aae4d224245d319e87bccbd6a (diff) | |
download | genenetwork3-57a6af689e85e5cbfe0a825d5b84ed9c451e6ad7.tar.gz |
add biweight r script and tests
Diffstat (limited to 'gn3/computations/correlations.py')
-rw-r--r-- | gn3/computations/correlations.py | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index f0ce502..89d37fc 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -7,6 +7,7 @@ from typing import Optional from typing import Callable import scipy.stats +from gn3.computations.biweight import call_biweight_script def map_shared_keys_to_values(target_sample_keys: List, @@ -99,8 +100,13 @@ def do_bicor(x_val, y_val) -> Tuple[float, float]: package :not packaged in guix """ - x_val, y_val = 0, 0 - return (x_val, y_val) + + try: + results = call_biweight_script(x_val, y_val) + except Exception as error: + raise error + + return results def filter_shared_sample_keys(this_samplelist, |