fix script path issues

1 files changed, 6 insertions, 2 deletions

diff --git a/gn3/computations/biweight.py b/gn3/computations/biweight.py
index c17de8e..e598a5b 100644
--- a/gn3/computations/biweight.py
+++ b/gn3/computations/biweight.py
@@ -2,17 +2,21 @@
 
 """module contains script to call biweight mid\
 correlation in R"""
-
 import subprocess
+import os
+from pathlib import Path
 from typing import List
 
+FILE_PATH = os.path.join(Path(__file__).parent.absolute(), "biweight.R")
+
 
 def call_biweight_script(trait_vals: List,
                          target_vals: List,
-                         path_to_script: str = "./biweight_R",
+                         path_to_script: str = FILE_PATH,
                          command: str = "Rscript"
                          ):
     '''biweight function'''
+
     args_1 = ' '.join(str(trait_val) for trait_val in trait_vals)
     args_2 = ' '.join(str(target_val) for target_val in target_vals)
     cmd = [command, path_to_script] + [args_1] + [args_2]