Fix R/qtl command and the way keyword arguments are passed

1 files changed, 2 insertions, 2 deletions

diff --git a/gn3/commands.py b/gn3/commands.py
index 255ea1d..14bd295 100644
--- a/gn3/commands.py
+++ b/gn3/commands.py
@@ -35,10 +35,10 @@ def compose_rqtl_cmd(rqtl_wrapper_cmd: str,
                      rqtl_wrapper_bool_kwargs: list) -> str:
     """Compose a valid R/qtl command given the correct input"""
     # Add kwargs with values
-    cmd = rqtl_wrapper_cmd + " " + " ".join(
+    cmd = f"Rscript { rqtl_wrapper_cmd } " + " ".join(
         [f"--{key} {val}" for key, val in rqtl_wrapper_kwargs.items()])
 
-    # Add boolean kwargs (kwargs without values)
+    # Add boolean kwargs (kwargs that are either on or off, like --interval)
     if rqtl_wrapper_bool_kwargs:
         cmd += " "
         cmd += " ".join([f"--{val}" for val in rqtl_wrapper_bool_kwargs])