delete dataset and trait files

2 files changed, 0 insertions, 117 deletions

diff --git a/gn3/api/datasets.py b/gn3/api/datasets.py
deleted file mode 100644
index 2d13120..0000000
--- a/gn3/api/datasets.py
+++ /dev/null
@@ -1,64 +0,0 @@
-"""this module contains code for creating datasets"""
-from flask import Blueprint
-from flask import jsonify
-
-from gn3.computations.datasets import create_dataset
-from gn3.computations.datasets import get_traits_data
-from gn3.computations.datasets import get_probeset_trait_data
-
-from gn3.db_utils import database_connector
-
-
-dataset = Blueprint("dataset", __name__)
-
-
-@dataset.route("/create/<dataset_name>/")
-@dataset.route("/create/<dataset_name>/<dataset_type>")
-def create_dataset_api(dataset_name, dataset_type=None):
-    """Endpoint of creating dataset"""
-
-    new_dataset = create_dataset(
-        dataset_type=dataset_type, dataset_name=dataset_name)
-
-    results = {
-        "dataset": new_dataset
-    }
-    return jsonify(results)
-
-
-@dataset.route("/fetch_traits_data/<dataset_name>/<dataset_type>")
-def fetch_traits_data(dataset_name, dataset_type):
-    """Endpoint for fetching Trait data"""
-    # should fetch this(temp)
-    trait_sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15,
-                        17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31,
-                        35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115,
-                        116, 117, 118, 119, 120, 919, 147,
-                        121, 40, 41, 124, 125, 128, 135, 129, 130, 131,
-                        132, 134, 138, 139, 140, 141, 142, 144,
-                        145, 148, 149, 920, 922, 2, 3, 1, 1100]
-
-    conn, _cursor = database_connector()
-    results = get_traits_data(sample_ids=trait_sample_ids, database_instance=conn,
-                              dataset_name=dataset_name, dataset_type=dataset_type)
-    conn.close()
-
-    return jsonify({"results": results})
-
-
-@dataset.route("/fetch_probeset_data/<dataset_name>")
-def fetch_probeset_data(dataset_name):
-    """Endpoint for fetching probeset trait data"""
-    trait_sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15,
-                        17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31,
-                        35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115,
-                        116, 117, 118, 119, 120, 919, 147,
-                        121, 40, 41, 124, 125, 128, 135, 129, 130, 131,
-                        132, 134, 138, 139, 140, 141, 142, 144,
-                        145, 148, 149, 920, 922, 2, 3, 1, 1100]
-
-    conn, _cursor = database_connector()
-
-    results = get_probeset_trait_data(trait_sample_ids, conn, dataset_name)
-
-    return jsonify({"results": results})
diff --git a/gn3/api/traits.py b/gn3/api/traits.py
deleted file mode 100644
index 002a281..0000000
--- a/gn3/api/traits.py
+++ /dev/null
@@ -1,53 +0,0 @@
-"""this module contains the all endpoints for traits"""
-from unittest import mock
-
-from flask import Blueprint
-from flask import jsonify
-from flask import request
-
-from gn3.computations.traits import fetch_trait
-from gn3.computations.traits import get_trait_info_data
-from gn3.db_utils import database_connector
-
-trait = Blueprint("trait", __name__)
-
-
-@trait.route("/<string:trait_name>/<string:dataset_name>")
-def create_trait(trait_name, dataset_name):
-    """Endpoint for creating trait and fetching strain\
-    values"""
-
-    # xtodo replace the object at most this endpoint
-    # requires dataset_type,dataset_name ,dataset_id
-    trait_dataset = {
-        "name": dataset_name,
-        "id": 12,
-        "type": "ProbeSet"  # temp values
-    }
-    conn, _cursor = database_connector()
-
-    trait_results = fetch_trait(dataset=trait_dataset,
-                                trait_name=trait_name,
-                                database=conn)
-
-    conn.close()
-
-    return jsonify(trait_results)
-
-
-@trait.route("/trait_info/<string:trait_name>", methods=["POST"])
-def fetch_trait_info(trait_name):
-    """Api endpoint for fetching the trait info \
-    expects the trait and trait dataset to have\
-    been created """
-    data = request.get_json()
-
-    trait_dataset = data["trait_dataset"]
-    trait_data = data["trait"]
-    _trait_name = trait_name  # should be used as key to return results
-
-    database_instance = mock.Mock()
-
-    results = get_trait_info_data(trait_dataset, trait_data, database_instance)
-
-    return jsonify(results)