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| author | zsloan | 2021-08-26 20:17:14 +0000 |
|---|---|---|
| committer | zsloan | 2021-09-23 19:29:59 +0000 |
| commit | 9aeafe51e60989fb018d147163c4fb861ceeb256 (patch) | |
| tree | 644cb56de624586b080964b063dd99fb44b1dda0 /gn3/api | |
| parent | 1408b107beb4c799a1d7afaf571f53d0d56305bf (diff) | |
| download | genenetwork3-9aeafe51e60989fb018d147163c4fb861ceeb256.tar.gz | |
Added genofile name to inputs for processing R/qtl pair-scan results, since it's needed to store the proximal/distal markers for each position
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/rqtl.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index b0405f4..2ff0f4e 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -49,7 +49,7 @@ run the rqtl_wrapper script and return the results as JSON os.system(rqtl_cmd.get('rqtl_cmd')) if "pairscan" in boolean_kwargs: - rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file')) + rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile) else: rqtl_output['results'] = process_rqtl_mapping(rqtl_cmd.get('output_file')) |