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| author | Frederick Muriuki Muriithi | 2022-05-24 04:46:57 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-05-24 05:16:55 +0300 |
| commit | 36f8421a8fe223189ab88ee1df3923719ffa4fc0 (patch) | |
| tree | 7f79b4f594ec787190c9a7c7dcbdd4bec40a0db1 /gn3/api | |
| parent | 63d9c9932721e98a9d6715686214157e276af105 (diff) | |
| download | genenetwork3-36f8421a8fe223189ab88ee1df3923719ffa4fc0.tar.gz | |
New script to compute partial correlations
* Add a new script to compute the partial correlations against: - a select list of traits, or - an entire dataset depending on the specified subcommand. This new script is meant to supercede the `scripts/partial_correlations.py` script. * Fix the check for errors * Reorganise the order of arguments for the `partial_correlations_with_target_traits` function: move the `method` argument before the `target_trait_names` argument so that the common arguments in the partial correlation computation functions share the same order.
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/correlation.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py index 5f2d486..3aadcb9 100644 --- a/gn3/api/correlation.py +++ b/gn3/api/correlation.py @@ -148,8 +148,8 @@ def partial_correlation(): trait_fullname(args["primary_trait"]), tuple( trait_fullname(trait) for trait in args["control_traits"]), + args["method"], tuple( - trait_fullname(trait) for trait in args["target_traits"]), - args["method"]) + trait_fullname(trait) for trait in args["target_traits"])) return build_response({"status": "success", "results": results}) |