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author | Munyoki Kilyungi | 2023-02-15 00:25:20 +0300 |
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committer | BonfaceKilz | 2023-03-01 22:03:39 +0300 |
commit | 104723d9954359cbc10140c36d4ae4f8d2f4f7f4 (patch) | |
tree | e81c17fe975616ca3f4004a389f96221b2ff8cb0 /gn3/api | |
parent | 01e12ddb0c7f71c8c1700a4fac0b9447d83f3f9f (diff) | |
download | genenetwork3-104723d9954359cbc10140c36d4ae4f8d2f4f7f4.tar.gz |
Create API endpoint for fetching trait metadata
* gn3/api/metadata.py (dataset_metadata): New function and endpoint.
(jsonify_dataset_metadata): Rename to dataset_metadata.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/api')
-rw-r--r-- | gn3/api/metadata.py | 18 |
1 files changed, 17 insertions, 1 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 8f6127f..f87743b 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -8,13 +8,14 @@ from flask import current_app from SPARQLWrapper import SPARQLWrapper from gn3.db.rdf import get_dataset_metadata +from gn3.db.rdf import get_trait_metadata metadata = Blueprint("metadata", __name__) @metadata.route("/dataset/<name>", methods=["GET"]) -def jsonify_dataset_metadata(name): +def dataset_metadata(name): """Fetch a dataset's metadata given it's ACCESSION_ID""" try: return jsonify( @@ -26,3 +27,18 @@ def jsonify_dataset_metadata(name): # The virtuoso server is misconfigured or it isn't running at all except (RemoteDisconnected, URLError): return jsonify({}) + + +@metadata.route("/dataset/<dataset_name>/trait/<trait_name>", methods=["GET"]) +def trait_metadata(dataset_name, trait_name): + """Fetch a trait's metadata given the trait_name and dataset_name'""" + try: + return jsonify( + get_trait_metadata( + SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")), + trait_name, dataset_name + ).data + ) + # The virtuoso server is misconfigured or it isn't running at all + except (RemoteDisconnected, URLError): + return jsonify({}) |