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authorFrederick Muriuki Muriithi2023-07-10 11:36:47 +0300
committerFrederick Muriuki Muriithi2023-07-10 11:36:47 +0300
commitc6ac30d4ccc26553a12e8c37cdf9078cbe9084b3 (patch)
treea40cea1c2b129e0e37b70d42c6f87fe51a5ec178 /gn3/api/search.py
parentedebea34ac6545909737ce9540e9d51858550873 (diff)
downloadgenenetwork3-c6ac30d4ccc26553a12e8c37cdf9078cbe9084b3.tar.gz
Fix linting errors caused by bump to Python 3.10migrate-to-python3.10
Diffstat (limited to 'gn3/api/search.py')
-rw-r--r--gn3/api/search.py5
1 files changed, 3 insertions, 2 deletions
diff --git a/gn3/api/search.py b/gn3/api/search.py
index aa844ee..ada845d 100644
--- a/gn3/api/search.py
+++ b/gn3/api/search.py
@@ -147,12 +147,14 @@ def parse_position(spec: str) -> tuple[Maybe[int], Maybe[int]]:
point = apply_si_suffix(spec)
return Just(max(0, point - width)), Just(point + width)
+def to_megabases(val):
+ """Convert `val` to megabases."""
+ return str(Decimal(val)/10**6)
def parse_position_field(location_slot: int, query: bytes) -> xapian.Query:
"""Parse position and return a xapian query."""
start, end = parse_position(query.decode("utf-8"))
# TODO: Convert the xapian index to use bases instead of megabases.
- to_megabases = lambda x: str(Decimal(x)/10**6)
return (xapian.NumberRangeProcessor(location_slot)
(start.maybe("", to_megabases), end.maybe("", to_megabases))) # type: ignore
@@ -176,7 +178,6 @@ def parse_location_field(species_query: xapian.Query,
def make_query(interval: ChromosomalInterval) -> xapian.Query:
# TODO: Convert the xapian index to use bases instead of megabases.
- to_megabases = lambda x: str(Decimal(x)/10**6)
return combine_queries(xapian.Query.OP_AND,
species_query,
xapian.Query(chromosome_prefix + interval.chromosome),