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| author | Arun Isaac | 2023-01-24 13:44:00 +0000 |
|---|---|---|
| committer | Arun Isaac | 2023-01-24 13:44:00 +0000 |
| commit | ecb8929c4a749ff24e8d3086331ce149dc66b574 (patch) | |
| tree | 7a0cab6d896f2076dd5ce9e83a82b36fa8dd78a9 /gn3/api/search.py | |
| parent | be2034b4e6666861c42702d663e1638c06e4793a (diff) | |
| download | genenetwork3-ecb8929c4a749ff24e8d3086331ce149dc66b574.tar.gz | |
search: Rename the mb prefix to position.
* gn3/api/search.py (parse_query): Rename the mb prefix to position.
Diffstat (limited to 'gn3/api/search.py')
| -rw-r--r-- | gn3/api/search.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gn3/api/search.py b/gn3/api/search.py index d25f362..e47e2f1 100644 --- a/gn3/api/search.py +++ b/gn3/api/search.py @@ -194,7 +194,7 @@ def parse_query(synteny_files_directory: Path, query: str): queryparser.add_boolean_prefix("chr", chromosome_prefix) queryparser.add_boolean_prefix("peakchr", "XPC") queryparser.add_prefix("description", "XD") - range_prefixes = ["mean", "peak", "mb", "peakmb", "additive", "year"] + range_prefixes = ["mean", "peak", "position", "peakmb", "additive", "year"] for i, prefix in enumerate(range_prefixes): queryparser.add_rangeprocessor(xapian.NumberRangeProcessor(i, prefix + ":")) @@ -205,7 +205,7 @@ def parse_query(synteny_files_directory: Path, query: str): field_processors = [partial(parse_location_field, xapian.Query(species_prefix + species), chromosome_prefix, - range_prefixes.index("mb"), + range_prefixes.index("position"), Just)] # With synteny search, we search for the same gene sequences # across different species. But, the same gene sequences may be @@ -220,7 +220,7 @@ def parse_query(synteny_files_directory: Path, query: str): partial(parse_location_field, xapian.Query(species_prefix + lifted_species), chromosome_prefix, - range_prefixes.index("mb"), + range_prefixes.index("position"), partial(liftover_interval, synteny_files_directory / chain_file))) queryparser.add_boolean_prefix( |