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| author | Munyoki Kilyungi | 2023-12-20 14:47:42 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-01-06 14:15:26 +0300 |
| commit | 251987489eb02ff0b781e4e9d419fcf34a7c8eca (patch) | |
| tree | 31c60ade5ff47430e374e441ab9877ef5ae0fec6 /gn3/api/metadata.py | |
| parent | 507f35a6027d263159d37816e033021b578d27db (diff) | |
| download | genenetwork3-251987489eb02ff0b781e4e9d419fcf34a7c8eca.tar.gz | |
Use gnt:geneSymbol property to fetch genes in Probeset RDF query.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/api/metadata.py')
| -rw-r--r-- | gn3/api/metadata.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index e85ac87..45b731e 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -903,7 +903,8 @@ def probesets(name): $prefix CONSTRUCT { - ?probeset ?predicate ?object . + ?probeset ?predicate ?object ; + gnt:geneSymbol ?symbol . ?symbol ?symbolPred ?symbolObj . ?resource rdfs:label ?resourceLabel ; rdfs:comments ?resourceComments . @@ -912,9 +913,11 @@ CONSTRUCT { ?probeset rdf:type gnc:Probeset ; rdfs:label "$name" ; ?predicate ?object . + FILTER (!regex(str(?predicate), '(geneSymbol)', 'i')) . OPTIONAL { - ?symbol ^gnt:symbol ?probeset ; - rdf:type gnc:GeneSymbol ; + ?probeset gnt:geneSymbol ?symbolName . + ?symbol gnt:geneSymbol ?symbolName ; + rdf:type gnc:Gene ; ?symbolPred ?symbolObj . ?resource ^dct:references ?symbol ; a ?resourceLink . |