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authorAlexander Kabui2021-04-05 14:34:01 +0300
committerAlexander Kabui2021-04-05 14:34:01 +0300
commita301093ce9ea825606db29bd1f1f40e1971897dd (patch)
tree10f0ee83b127a5cb907eb66dfe9955b44a0cd105 /gn3/api/datasets.py
parent2301b11e8a975f2e6dc7e5144e4b26c34b186501 (diff)
downloadgenenetwork3-a301093ce9ea825606db29bd1f1f40e1971897dd.tar.gz
fix for fetching dataset traits data
Diffstat (limited to 'gn3/api/datasets.py')
-rw-r--r--gn3/api/datasets.py20
1 files changed, 10 insertions, 10 deletions
diff --git a/gn3/api/datasets.py b/gn3/api/datasets.py
index 70ee3a1..eb4097d 100644
--- a/gn3/api/datasets.py
+++ b/gn3/api/datasets.py
@@ -32,19 +32,19 @@ def create_dataset_api(dataset_name, dataset_type=None):
@dataset.route("/fetch_traits_data/<dataset_name>/<dataset_type>")
def fetch_traits_data(dataset_name, dataset_type):
- """endpoints fetches sample for each trait in\
- a dataset"""
+ """test fetch_traits_data/dataset_name/dataset_type"""
# what actually brings speed issues in correlation
- sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15,
- 17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31,
- 35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115,
- 116, 117, 118, 119, 120, 919, 147,
- 121, 40, 41, 124, 125, 128, 135, 129, 130, 131,
- 132, 134, 138, 139, 140, 141, 142, 144,
- 145, 148, 149, 920, 922, 2, 3, 1, 1100]
+ # should fetch this
+ trait_sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15,
+ 17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31,
+ 35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115,
+ 116, 117, 118, 119, 120, 919, 147,
+ 121, 40, 41, 124, 125, 128, 135, 129, 130, 131,
+ 132, 134, 138, 139, 140, 141, 142, 144,
+ 145, 148, 149, 920, 922, 2, 3, 1, 1100]
conn, _cursor = database_connector()
- results = get_traits_data(sample_ids=sample_ids, database_instance=conn,
+ results = get_traits_data(sample_ids=trait_sample_ids, database_instance=conn,
dataset_name=dataset_name, dataset_type=dataset_type)
conn.close()