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| author | Muriithi Frederick Muriuki | 2021-07-30 10:33:40 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2021-07-30 10:33:40 +0300 |
| commit | 238450af8aa3395b3ae5a636fada67206a863d85 (patch) | |
| tree | 46ae9c5a26c290ae11443a327fbe498460ba698d /docs/performance/slow-probesetdata-sql.org | |
| parent | beec957107298eef2b2a825ba0a744e4e95b0dcd (diff) | |
| download | genenetwork3-238450af8aa3395b3ae5a636fada67206a863d85.tar.gz | |
Rework db functions to enable postprocessing
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Rework the database functions to return a dict of key-value pairs, which
eases the postprocessing of the trait information.
The postprocessing is mainly to try an maintain data compatibility with the
code that is at the following locations:
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlTrait.py
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlDataset.py
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/heatmap/Heatmap.py
This was mainly a proof-of-concept, and the functions do not have testing
added for them: there is therefore need to add testing for the new
functions, and probably even rework them if they are found to be
complicated.
Diffstat (limited to 'docs/performance/slow-probesetdata-sql.org')
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