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| author | Alexander Kabui | 2022-03-15 14:08:39 +0300 |
|---|---|---|
| committer | GitHub | 2022-03-15 14:08:39 +0300 |
| commit | 16367dab9248d3aa2660e0b5cafdce25e8f7067c (patch) | |
| tree | 1d08f861dbd7302ff43489fc338c99fa3cf92e6f /docs/gemma.ipynb | |
| parent | 4b85316c6ca5355faf6ac85f755744f8d52e49d3 (diff) | |
| download | genenetwork3-16367dab9248d3aa2660e0b5cafdce25e8f7067c.tar.gz | |
Feature/refactored pca (#79)
* compute zscore function
* test case for computing zscore
* function to compute pca
* generate scree plot data
* generate new pca trait data from zscores and eigen_vec
* remove redundant functions
* generate factor loading table data
* generate pca temp dataset dict
* variable naming and error fixes
* unit test for processing factor loadings
* minor fixes for generating temp pca dataset
* pass datetime as argument to generate_pca temp dataset function
* add unittest for caching pca datasets
* cache temp datasets
* ignore missing imports for sklearn
* mypy fixes
* pylint fixes
* refactor tests for pca
* remove ununsed imports
* fix for generating pca traits vals
* mypy and code refactoring
* pep8 formatting and add docstrings
* remove comments /pep8 formatting
* sort eigen vectors based on eigen values
* minor fix for zscores
* fix for rounding variance ratios
* refactor tests
* rename module to pca
* rename datasets to traits
* fix failing tests
* fix caching function
* fixes return x and y coordinates for scree plot
* expand exception scope
* fix for deprecated numpy.matrix function
* fix for failing tests
* pep8 fixes
* remove comments
* fix merge conflict
* pylint fixes
* rename module name to test_pca
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