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authorMuriithi Frederick Muriuki2021-08-30 07:00:38 +0300
committerMuriithi Frederick Muriuki2021-08-30 07:00:38 +0300
commit983acfdfc523677b4d7501287a000b7fd52a2c39 (patch)
tree92547cd368fd0f024d4aedf92b1c3dc62417e65d /LICENSE
parentc045122908d36bba4ca197f3f67e89d80958f38f (diff)
downloadgenenetwork3-983acfdfc523677b4d7501287a000b7fd52a2c39.tar.gz
Implement module for interfacing with rust-qtlreaper
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/computations/heatmap.py: move `generate_traits_file` function to new module * gn3/computations/qtlreaper.py: new module to interface with the `rust-qtlreaper` utility. * gn3/settings.py: Provide setting for the path to the `rust-qtlreaper` utility * qtlfilesexport.py: Move `random_string` function to new module. Update to use functions in new module. Provide a module with functions to be used to interface with `rust-qtlreaper`. This module essentially contains all the functions that are needed to build the files needed for, and to run the qtlreaper utility.
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