init file to call ctl script

1 files changed, 20 insertions, 0 deletions

diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py
new file mode 100644
index 0000000..c4955a0
--- /dev/null
+++ b/gn3/computations/ctl.py
@@ -0,0 +1,20 @@
+"""module contains code to process ctl analysis data"""
+from gn3.commands import run_cmd
+
+from gn3.computations.wgcna import dump_wgcna_data
+from gn3.computations.wgcna import compose_wgcna_cmd
+
+
+def call_ctl_script(data):
+    """function to call ctl script"""
+
+    temp_file_name = dump_wgcna_data(data)
+    cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name)
+
+    try:
+        cmd_results = run_cmd(cmd)
+        print(cmd_results)
+    except Exception as e:
+        raise e
+
+    return "hello"