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| author | Muriithi Frederick Muriuki | 2021-08-27 15:51:27 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2021-08-27 15:51:27 +0300 |
| commit | 28fde00ee2835d404157652548a4265be3accede (patch) | |
| tree | 1ceeb9ea554dce4d3f6006a2138b9b6c3d1f074f | |
| parent | 1a3901b174d00af8fa7f5ae78b810de66024b5ab (diff) | |
| download | genenetwork3-28fde00ee2835d404157652548a4265be3accede.tar.gz | |
Provide intermediate data in final results
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Seeing as not every requirement/feature has been migrated over at this time,
this commit just provides all the intermediate data representations in the
final return of the function for later use down the line.
| -rw-r--r-- | gn3/computations/heatmap.py | 13 |
1 files changed, 7 insertions, 6 deletions
diff --git a/gn3/computations/heatmap.py b/gn3/computations/heatmap.py index 2f92048..3e96ed2 100644 --- a/gn3/computations/heatmap.py +++ b/gn3/computations/heatmap.py @@ -149,22 +149,22 @@ def heatmap_data(formd, search_result, conn: Any): def __retrieve_traitlist_and_datalist(threshold, fullname): trait = retrieve_trait_info(threshold, fullname, conn) - return ( - trait, - export_trait_data(retrieve_trait_data(trait, conn), strainlist)) + return (trait, retrieve_trait_data(trait, conn)) traits_details = [ __retrieve_traitlist_and_datalist(threshold, fullname) for fullname in search_result] traits_list = tuple(x[0] for x in traits_details) - traits_data_list = tuple(x[1] for x in traits_details) + traits_data_list = [x[1] for x in traits_details] + exported_traits_data_list = tuple( + export_trait_data(td, strainlist) for x in traits_data_list) return { "target_description_checked": formd.formdata.getvalue( "targetDescriptionCheck", ""), "cluster_checked": cluster_checked, "slink_data": ( - slink(cluster_traits(traits_data_list)) + slink(cluster_traits(exported_traits_data_list)) if cluster_checked else False), "sessionfile": formd.formdata.getvalue("session"), "genotype": genotype, @@ -173,7 +173,8 @@ def heatmap_data(formd, search_result, conn: Any): "ppolar": formd.ppolar, "mpolar":formd.mpolar, "traits_list": traits_list, - "traits_data_list": traits_data_list + "traits_data_list": traits_data_list, + "exported_traits_data_list": exported_traits_data_list } def compute_heatmap_order( |