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| author | Frederick Muriuki Muriithi | 2022-10-03 09:41:52 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-10-03 09:47:37 +0300 |
| commit | fe1b8be86b65346724f8f78ab9e5d897e0c480b0 (patch) | |
| tree | c9304461497dafffa75e480bf4e7f81953ac46da | |
| parent | ff34aee0f39c2e91db243461d7d67405e7aea0e3 (diff) | |
| download | genenetwork3-fe1b8be86b65346724f8f78ab9e5d897e0c480b0.tar.gz | |
Bug: Do not process data for output too early
* gn3/computations/rust_correlation.py: (parse_tissue_corr_data): The function
was parsing data from a file, and then converting the parsed values into a
comma-separated string for output, despite the fact that the data parsed is
not output in this specific function. This is a really bad idea, and leads
to errors showing up down the line, far removed from the cause.
| -rw-r--r-- | gn3/computations/rust_correlation.py | 4 |
1 files changed, 1 insertions, 3 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index 8c3a0d3..03af997 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -157,9 +157,7 @@ def parse_tissue_corr_data(symbol_name: str, corr_vals = dataset_vals.get(symbol.lower()) if corr_vals: - corr_vals = [str(trait)] + corr_vals - - data.append(",".join([str(x) for x in corr_vals])) + data.append([str(trait)] + corr_vals) except AttributeError: pass |