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| author | Frederick Muriuki Muriithi | 2021-09-15 06:01:44 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-09-15 06:01:44 +0300 |
| commit | f17b489c8eb94050b81b1a59fb43954d036f7c38 (patch) | |
| tree | ff4414fea0ff3b1a663e553f846cfa7abe5b0320 | |
| parent | ed2e4c0f9d68cfb720da95eba559d69359f7b5fc (diff) | |
| download | genenetwork3-f17b489c8eb94050b81b1a59fb43954d036f7c38.tar.gz | |
Fix format of arguments and expected values
* tests/unit/computations/test_heatmap.py: ordering is not longer provided as
a list of tuples; the ordering values are just a list of numbers now. This
commit updates the test to take this into consideration.
* tests/unit/computations/test_qtlreaper.py: the 'Chr' value if numeric, is
represented by an actual number, not a string. This commit updates the code
to take this into consideration.
| -rw-r--r-- | tests/unit/computations/test_heatmap.py | 8 | ||||
| -rw-r--r-- | tests/unit/computations/test_qtlreaper.py | 20 |
2 files changed, 14 insertions, 14 deletions
diff --git a/tests/unit/computations/test_heatmap.py b/tests/unit/computations/test_heatmap.py index f1bbefc..156af45 100644 --- a/tests/unit/computations/test_heatmap.py +++ b/tests/unit/computations/test_heatmap.py @@ -165,22 +165,22 @@ class TestHeatmap(TestCase): """Test retrieval of strains and values.""" for orders, slist, tdata, expected in [ [ - [(60, 2)], + [2], ["s1", "s2", "s3", "s4"], [[2, 9, 6, None, 4], [7, 5, None, None, 4], [9, None, 5, 4, 7], [6, None, None, 4, None]], - [[(60, 2), ["s1", "s3", "s4"], [9, 5, 4]]] + [[2, ["s1", "s3", "s4"], [9, 5, 4]]] ], [ - [(60, 3)], + [3], ["s1", "s2", "s3", "s4", "s5"], [[2, 9, 6, None, 4], [7, 5, None, None, 4], [9, None, 5, 4, 7], [6, None, None, 4, None]], - [[(60, 3), ["s1", "s4"], [6, 4]]] + [[3, ["s1", "s4"], [6, 4]]] ]]: with self.subTest(strainlist=slist, traitdata=tdata): self.assertEqual( diff --git a/tests/unit/computations/test_qtlreaper.py b/tests/unit/computations/test_qtlreaper.py index 495ed97..1d67827 100644 --- a/tests/unit/computations/test_qtlreaper.py +++ b/tests/unit/computations/test_qtlreaper.py @@ -15,52 +15,52 @@ class TestQTLReaper(TestCase): "tests/unit/computations/data/qtlreaper/main_output_sample.txt"), [ { - "ID": "T1", "Locus": "rs31443144", "Chr": "1", "cM": 1.500, + "ID": "T1", "Locus": "rs31443144", "Chr": 1, "cM": 1.500, "Mb": 3.010, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs6269442", "Chr": "1", "cM": 1.500, + "ID": "T1", "Locus": "rs6269442", "Chr": 1, "cM": 1.500, "Mb": 3.492, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs32285189", "Chr": "1", "cM": 1.630, + "ID": "T1", "Locus": "rs32285189", "Chr": 1, "cM": 1.630, "Mb": 3.511, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs258367496", "Chr": "1", "cM": 1.630, + "ID": "T1", "Locus": "rs258367496", "Chr": 1, "cM": 1.630, "Mb": 3.660, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs32430919", "Chr": "1", "cM": 1.750, + "ID": "T1", "Locus": "rs32430919", "Chr": 1, "cM": 1.750, "Mb": 3.777, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs36251697", "Chr": "1", "cM": 1.880, + "ID": "T1", "Locus": "rs36251697", "Chr": 1, "cM": 1.880, "Mb": 3.812, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs30658298", "Chr": "1", "cM": 2.010, + "ID": "T1", "Locus": "rs30658298", "Chr": 1, "cM": 2.010, "Mb": 4.431, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs51852623", "Chr": "1", "cM": 2.010, + "ID": "T1", "Locus": "rs51852623", "Chr": 1, "cM": 2.010, "Mb": 4.447, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs31879829", "Chr": "1", "cM": 2.140, + "ID": "T1", "Locus": "rs31879829", "Chr": 1, "cM": 2.140, "Mb": 4.519, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 }, { - "ID": "T1", "Locus": "rs36742481", "Chr": "1", "cM": 2.140, + "ID": "T1", "Locus": "rs36742481", "Chr": 1, "cM": 2.140, "Mb": 4.776, "LRS": 0.500, "Additive": -0.074, "pValue": 1.000 } |