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authorFrederick Muriuki Muriithi2022-11-15 04:22:17 +0300
committerFrederick Muriuki Muriithi2022-11-15 04:22:17 +0300
commitb0d4aeb29c059c6dea85a7993149fa1e0697f702 (patch)
tree301bd3db1bb25cf622c7f83c6773e1ac5711ae7e
parent9aee64c5bccae917ab0e65c882be8f442fc0f5ca (diff)
downloadgenenetwork3-b0d4aeb29c059c6dea85a7993149fa1e0697f702.tar.gz
pylint: Fix linting errors.
-rw-r--r--gn3/auth/authorisation/groups.py1
-rw-r--r--gn3/auth/db.py18
-rw-r--r--main.py7
-rw-r--r--tests/unit/conftest.py3
4 files changed, 20 insertions, 9 deletions
diff --git a/gn3/auth/authorisation/groups.py b/gn3/auth/authorisation/groups.py
index ad30763..5290196 100644
--- a/gn3/auth/authorisation/groups.py
+++ b/gn3/auth/authorisation/groups.py
@@ -8,6 +8,7 @@ from . import authorised_p
("create-group",), success_message="Successfully created group.",
error_message="Failed to create group.")
def create_group(conn, group_name):
+ """Create a group"""
with db.cursor(conn) as cursor:
group_id = uuid.uuid4()
cursor.execute(
diff --git a/gn3/auth/db.py b/gn3/auth/db.py
index c0d0415..e732a03 100644
--- a/gn3/auth/db.py
+++ b/gn3/auth/db.py
@@ -4,16 +4,24 @@ import contextlib
@contextlib.contextmanager
def connection(db_path: str):
- connection = sqlite3.connect(db_path)
+ """Create the connection to the auth database."""
+ conn = sqlite3.connect(db_path)
try:
- yield connection
+ yield conn
+ except: # pylint: disable=bare-except
+ conn.rollback()
finally:
- connection.close()
+ conn.commit()
+ conn.close()
@contextlib.contextmanager
-def cursor(connection):
- cur = connection.cursor()
+def cursor(conn):
+ """Get a cursor from the given connection to the auth database."""
+ cur = conn.cursor()
try:
yield cur
+ except: # pylint: disable=bare-except
+ conn.rollback()
finally:
+ conn.commit()
cur.close()
diff --git a/main.py b/main.py
index aaa51da..8d03148 100644
--- a/main.py
+++ b/main.py
@@ -1,5 +1,7 @@
"""Main entry point for project"""
+from yoyo import get_backend, read_migrations
+from gn3 import migrations
from gn3.app import create_app
app = create_app()
@@ -8,9 +10,8 @@ app = create_app()
@app.cli.command()
def apply_migrations():
- from yoyo import get_backend, read_migrations
- from gn3.migrations import apply_migrations
- apply_migrations(
+ """Apply the dabasase migrations."""
+ migrations.apply_migrations(
get_backend(f'sqlite:///{app.config["AUTH_DB"]}'),
read_migrations(app.config["AUTH_MIGRATIONS"]))
diff --git a/tests/unit/conftest.py b/tests/unit/conftest.py
index 9660c32..e5d941d 100644
--- a/tests/unit/conftest.py
+++ b/tests/unit/conftest.py
@@ -9,6 +9,7 @@ from gn3.app import create_app
@pytest.fixture(scope="session")
def test_app():
+ """Fixture: setup the test app"""
# Do some setup
with TemporaryDirectory() as testdir:
testdb = Path(testdir).joinpath(
@@ -21,7 +22,7 @@ def test_app():
testdb.unlink(missing_ok=True)
@pytest.fixture(scope="session")
-def client(test_app):
+def client(test_app): # pylint: disable=redefined-outer-name
"""Create a test client fixture for tests"""
with test_app.app_context():
yield test_app.test_client()