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| author | zsloan | 2023-05-22 17:39:52 +0000 |
|---|---|---|
| committer | zsloan | 2023-05-22 17:39:52 +0000 |
| commit | db6f7c5099445ce52ff8869438aabd4dc3b332f3 (patch) | |
| tree | c5d06f46bdae27a0796e99f99a6379d11d654d19 | |
| parent | 44603ac3dab3f2628112f964080c1871f6c77d84 (diff) | |
| download | genenetwork3-db6f7c5099445ce52ff8869438aabd4dc3b332f3.tar.gz | |
Use f-string for setting genofile_path
Also set default value for os.environ.get("GENENETWORK_FILES")
| -rw-r--r-- | gn3/db/datasets.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py index 4fdf797..4372818 100644 --- a/gn3/db/datasets.py +++ b/gn3/db/datasets.py @@ -13,7 +13,7 @@ def retrieve_sample_list(group: str): """ samplelist = [] - genofile_path = os.environ.get("GENENETWORK_FILES") + "/genotype/" + group + ".geno" + genofile_path = f"{os.environ.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}/genotype/{group}.geno" if os.path.isfile(genofile_path): with open(genofile_path, encoding="utf-8") as genofile: line = "" |