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| author | Pjotr Prins | 2023-07-10 10:58:02 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2023-07-10 10:58:02 -0500 |
| commit | 188c3d7880fd6481af4758b3e94577e81031c3c5 (patch) | |
| tree | 52d0a8d07ef6180bbbc113c7b6ddb72380a64b8b | |
| parent | 8ddd7f80f15943f9a48ac760babff9da9f95c043 (diff) | |
| download | genenetwork3-188c3d7880fd6481af4758b3e94577e81031c3c5.tar.gz | |
Execute SPARQL and get s-exp
| -rw-r--r-- | gn3-guile/web/.guix-shell | 4 | ||||
| -rwxr-xr-x | gn3-guile/web/webserver.scm | 9 |
2 files changed, 9 insertions, 4 deletions
diff --git a/gn3-guile/web/.guix-shell b/gn3-guile/web/.guix-shell index bb14b26..2be81ce 100644 --- a/gn3-guile/web/.guix-shell +++ b/gn3-guile/web/.guix-shell @@ -1,8 +1,8 @@ #!/bin/bash # # run with options '-- ./webserver.scm 8091' e.g. -# . .guix-shell -- guile -e main ./webserver.scm 8091 +# . .guix-shell -- guile --listen=1970 -e main ./webserver.scm 8091 echo "Note run: running web-server" -guix shell guile guile-fibers guile-json gnutls guile-readline guile-redis openssl nss-certs $* +guix shell guile guile-fibers guile-json guile-gnutls guile-readline guile-redis openssl nss-certs $* diff --git a/gn3-guile/web/webserver.scm b/gn3-guile/web/webserver.scm index 7ce2a9a..e72eba9 100755 --- a/gn3-guile/web/webserver.scm +++ b/gn3-guile/web/webserver.scm @@ -10,6 +10,8 @@ (json) (ice-9 match) (ice-9 format) + (ice-9 iconv) + (ice-9 receive) (srfi srfi-1) (srfi srfi-26) (web http) @@ -91,8 +93,11 @@ CONSTRUCT { ;; curl "https://sparql.genenetwork.org/sparql?default-graph-uri=&query=prefix+gn%3A+%3Chttp%3A%2F%2Fgenenetwork.org%2F%3E+%0D%0A%0D%0ASELECT+distinct+*+WHERE+%7B%3Fu++gn%3AbinomialName+%3Fo%7D&format=application%2Fsparql-results%2Bjson"|jq (define (get-species) - (http-get "http://sparql.genenetwork.org/sparql?default-graph-uri=&query=") - ) + (bytevector->string (receive (response-status response-body) + (http-request "https://sparql.genenetwork.org/sparql?default-graph-uri=&query=prefix+gn%3A+%3Chttp%3A%2F%2Fgenenetwork.org%2F%3E+%0D%0A%0D%0ASELECT+distinct+*+WHERE+%7B%3Fu++gn%3AbinomialName+%3Fo%7D&format=application%2Fsparql-results%2Bjson") + + response-body) "UTF-8" + )) (define (get-species-api-str) (scm->json-string #("https://genenetwork.org/api/v2/mouse/" |