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authorFrederick Muriuki Muriithi2023-05-15 11:40:28 +0300
committerFrederick Muriuki Muriithi2023-05-15 11:40:28 +0300
commit09ab7df7a5cedb3bf09117626a46185ad46566f8 (patch)
tree8505fcc57b7aedb05fb1af454d0dcfe250656012
parent2bdd136b18765fba47a8e313ebff3e65086ca1b1 (diff)
downloadgenenetwork3-09ab7df7a5cedb3bf09117626a46185ad46566f8.tar.gz
collections: Move code to new package. Create new collections.
Move the code to a new package. Enable the creation of new collection by both authenticated and anonymous users.
-rw-r--r--gn3/auth/authorisation/checks.py13
-rw-r--r--gn3/auth/authorisation/users/collections/__init__.py1
-rw-r--r--gn3/auth/authorisation/users/collections/models.py (renamed from gn3/auth/authorisation/users/collections.py)66
-rw-r--r--gn3/auth/authorisation/users/collections/views.py73
-rw-r--r--gn3/auth/authorisation/users/views.py35
5 files changed, 147 insertions, 41 deletions
diff --git a/gn3/auth/authorisation/checks.py b/gn3/auth/authorisation/checks.py
index 0825c84..1c87c02 100644
--- a/gn3/auth/authorisation/checks.py
+++ b/gn3/auth/authorisation/checks.py
@@ -2,12 +2,12 @@
from functools import wraps
from typing import Callable
-from flask import current_app as app
+from flask import request, current_app as app
from gn3.auth import db
from . import privileges as auth_privs
-from .errors import AuthorisationError
+from .errors import InvalidData, AuthorisationError
from ..authentication.oauth2.resource_server import require_oauth
@@ -59,3 +59,12 @@ def authorised_p(
raise AuthorisationError(error_description)
return __authoriser__
return __build_authoriser__
+
+def require_json(func):
+ """Ensure the request has JSON data."""
+ @wraps(func)
+ def __req_json__(*args, **kwargs):
+ if bool(request.json):
+ return func(*args, **kwargs)
+ raise InvalidData("Expected JSON data in the request.")
+ return __req_json__
diff --git a/gn3/auth/authorisation/users/collections/__init__.py b/gn3/auth/authorisation/users/collections/__init__.py
new file mode 100644
index 0000000..88ab040
--- /dev/null
+++ b/gn3/auth/authorisation/users/collections/__init__.py
@@ -0,0 +1 @@
+"""Package dealing with user collections."""
diff --git a/gn3/auth/authorisation/users/collections.py b/gn3/auth/authorisation/users/collections/models.py
index 2e2672c..46dfb53 100644
--- a/gn3/auth/authorisation/users/collections.py
+++ b/gn3/auth/authorisation/users/collections/models.py
@@ -1,11 +1,21 @@
"""Handle user collections."""
-import uuid
import json
+from uuid import UUID, uuid4
+from datetime import datetime
from redis import Redis
from email_validator import validate_email, EmailNotValidError
-from .models import User
+from ..models import User
+
+class CollectionJSONEncoder(json.JSONEncoder):
+ """Serialise collection objects into JSON."""
+ def default(self, obj):# pylint: disable=[arguments-renamed]
+ if isinstance(obj, UUID):
+ return str(obj)
+ if isinstance(obj, datetime):
+ return obj.strftime("%b %d %Y %I:%M%p")
+ return json.JSONEncoder.default(self, obj)
def __valid_email__(email:str) -> bool:
"""Check for email validity."""
@@ -55,13 +65,29 @@ def __retrieve_old_accounts__(rconn: Redis) -> dict:
}
return __build_email_uuid_bridge__(rconn)
-def __retrieve_old_user_collections__(rconn: Redis, old_user_id: uuid.UUID) -> tuple:
+def parse_collection(coll: dict) -> dict:
+ """Parse the collection as persisted in redis to a usable python object."""
+ return {
+ "id": UUID(coll["id"]),
+ "name": coll["name"],
+ "created": datetime.strptime(coll["created"], "%b %d %Y %I:%M%p"),
+ "changed": datetime.strptime(coll["changed"], "%b %d %Y %I:%M%p"),
+ "num_members": int(coll["num_members"]),
+ "members": coll["members"]
+ }
+
+def dump_collection(pythoncollection: dict) -> str:
+ """Convert the collection from a python object to a json string."""
+ return json.dumps(pythoncollection, cls=CollectionJSONEncoder)
+
+def __retrieve_old_user_collections__(rconn: Redis, old_user_id: UUID) -> tuple:
"""Retrieve any old collections relating to the user."""
- return tuple(json.loads(rconn.hget("collections", old_user_id) or "[]"))
+ return tuple(parse_collection(coll) for coll in
+ json.loads(rconn.hget("collections", old_user_id) or "[]"))
-def user_collections(rconn: Redis, user: User) -> tuple:
+def user_collections(rconn: Redis, user: User) -> tuple[dict, ...]:
"""Retrieve current user collections."""
- collections = tuple(json.loads(
+ collections = tuple(parse_collection(coll) for coll in json.loads(
rconn.hget("collections", str(user.user_id)) or
"[]"))
old_accounts = __retrieve_old_accounts__(rconn)
@@ -69,9 +95,35 @@ def user_collections(rconn: Redis, user: User) -> tuple:
not old_accounts[user.email]["collections-migrated"]):
old_user_id = old_accounts[user.email]["user_id"]
collections = tuple(set(collections + __retrieve_old_user_collections__(
- rconn, uuid.UUID(old_user_id))))
+ rconn, UUID(old_user_id))))
rconn.hdel("collections", old_user_id)
__toggle_boolean_field__(rconn, user.email, "collections-migrated")
rconn.hset(
"collections", key=user.user_id, value=json.dumps(collections))
return collections
+
+def save_collections(rconn: Redis, user: User, collections: tuple[dict, ...]) -> tuple[dict, ...]:
+ """Save the `collections` to redis."""
+ rconn.hset(
+ "collections",
+ str(user.user_id),
+ json.dumps(collections, cls=CollectionJSONEncoder))
+ return collections
+
+def add_to_user_collections(rconn: Redis, user: User, collection: dict) -> dict:
+ """Add `collection` to list of user collections."""
+ ucolls = user_collections(rconn, user)
+ save_collections(rconn, user, ucolls + (collection,))
+ return collection
+
+def create_collection(rconn: Redis, user: User, name: str, traits: tuple) -> dict:
+ """Create a new collection."""
+ now = datetime.utcnow()
+ return add_to_user_collections(rconn, user, {
+ "id": uuid4(),
+ "name": name,
+ "created": now,
+ "changed": now,
+ "num_members": len(traits),
+ "members": traits
+ })
diff --git a/gn3/auth/authorisation/users/collections/views.py b/gn3/auth/authorisation/users/collections/views.py
new file mode 100644
index 0000000..cd9458e
--- /dev/null
+++ b/gn3/auth/authorisation/users/collections/views.py
@@ -0,0 +1,73 @@
+"""Views regarding user collections."""
+from uuid import UUID
+
+from redis import Redis
+from flask import jsonify, request, Response, Blueprint, current_app
+
+from gn3.auth import db
+from gn3.auth.db_utils import with_db_connection
+from gn3.auth.authorisation.checks import require_json
+from gn3.auth.authorisation.errors import NotFoundError
+
+from gn3.auth.authentication.users import User, user_by_id
+from gn3.auth.authentication.oauth2.resource_server import require_oauth
+
+from .models import user_collections, create_collection
+
+collections = Blueprint("collections", __name__)
+
+@collections.route("/list")
+@require_oauth("profile user")
+def list_user_collections() -> Response:
+ """Retrieve the user ids"""
+ with (require_oauth.acquire("profile user") as the_token,
+ Redis.from_url(current_app.config["REDIS_URI"],
+ decode_responses=True) as redisconn):
+ return jsonify(user_collections(redisconn, the_token.user))
+
+@collections.route("/<uuid:anon_id>/list")
+def list_anonymous_collections(anon_id: UUID) -> Response:
+ """Fetch anonymous collections"""
+ with Redis.from_url(
+ current_app.config["REDIS_URI"], decode_responses=True) as redisconn:
+ def __list__(conn: db.DbConnection) -> tuple:
+ try:
+ _user = user_by_id(conn, anon_id)
+ current_app.logger.warning(
+ "Fetch collections for authenticated user using the "
+ "`list_user_collections()` endpoint.")
+ return tuple()
+ except NotFoundError as _nfe:
+ return user_collections(
+ redisconn, User(anon_id, "anon@ymous.user", "Anonymous User"))
+
+ return jsonify(with_db_connection(__list__))
+
+@require_oauth("profile user")
+def __new_collection_as_authenticated_user__(redisconn, name, traits):
+ """Create a new collection as an authenticated user."""
+ with require_oauth.acquire("profile user") as token:
+ return create_collection(redisconn, token.user, name, traits)
+
+def __new_collection_as_anonymous_user__(redisconn, name, traits):
+ """Create a new collection as an anonymous user."""
+ return create_collection(redisconn,
+ User(UUID(request.json.get("anon_id")),
+ "anon@ymous.user",
+ "Anonymous User"),
+ name,
+ traits)
+
+@collections.route("/new", methods=["POST"])
+@require_json
+def new_user_collection() -> Response:
+ """Create a new collection."""
+ with (Redis.from_url(current_app.config["REDIS_URI"],
+ decode_responses=True) as redisconn):
+ traits = tuple(request.json.get("traits", tuple()))# type: ignore[union-attr]
+ name = request.json.get("name")# type: ignore[union-attr]
+ if bool(request.headers.get("Authorization")):
+ return jsonify(__new_collection_as_authenticated_user__(
+ redisconn, name, traits))
+ return jsonify(__new_collection_as_anonymous_user__(
+ redisconn, name, traits))
diff --git a/gn3/auth/authorisation/users/views.py b/gn3/auth/authorisation/users/views.py
index a0f00de..ae39110 100644
--- a/gn3/auth/authorisation/users/views.py
+++ b/gn3/auth/authorisation/users/views.py
@@ -1,11 +1,9 @@
"""User authorisation endpoints."""
import traceback
-from uuid import UUID
from typing import Any
from functools import partial
import sqlite3
-from redis import Redis
from email_validator import validate_email, EmailNotValidError
from flask import request, jsonify, Response, Blueprint, current_app
@@ -14,7 +12,7 @@ from gn3.auth.dictify import dictify
from gn3.auth.db_utils import with_db_connection
from .models import list_users
-from .collections import user_collections
+from .collections.views import collections
from ..groups.models import user_group as _user_group
from ..resources.models import user_resources as _user_resources
@@ -23,11 +21,11 @@ from ..errors import (
NotFoundError, UsernameError, PasswordError, UserRegistrationError)
from ...authentication.oauth2.resource_server import require_oauth
+from ...authentication.users import User, save_user, set_user_password
from ...authentication.oauth2.models.oauth2token import token_by_access_token
-from ...authentication.users import (
- User, save_user, user_by_id, set_user_password)
users = Blueprint("users", __name__)
+users.register_blueprint(collections, url_prefix="/collections")
@users.route("/", methods=["GET"])
@require_oauth("profile")
@@ -174,30 +172,3 @@ def list_all_users() -> Response:
with require_oauth.acquire("profile group") as _the_token:
return jsonify(tuple(
dictify(user) for user in with_db_connection(list_users)))
-
-@users.route("collections/list")
-@require_oauth("profile user")
-def list_user_collections() -> Response:
- """Retrieve the user ids"""
- with (require_oauth.acquire("profile user") as the_token,
- Redis.from_url(current_app.config["REDIS_URI"],
- decode_responses=True) as redisconn):
- return jsonify(user_collections(redisconn, the_token.user))
-
-@users.route("<uuid:anon_id>/collections/list")
-def list_anonymous_collections(anon_id: UUID) -> Response:
- """Fetch anonymous collections"""
- with Redis.from_url(
- current_app.config["REDIS_URI"], decode_responses=True) as redisconn:
- def __list__(conn: db.DbConnection) -> tuple:
- try:
- _user = user_by_id(conn, anon_id)
- current_app.logger.warning(
- "Fetch collections for authenticated user using the "
- "`list_user_collections()` endpoint.")
- return tuple()
- except NotFoundError as _nfe:
- return user_collections(
- redisconn, User(anon_id, "anon@ymous.user", "Anonymous User"))
-
- return jsonify(with_db_connection(__list__))