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| author | Frederick Muriuki Muriithi | 2021-11-26 11:50:33 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-29 12:05:16 +0300 |
| commit | ee200d60bd3065c4c9e69bcbb756715211b711d2 (patch) | |
| tree | adffe12351e8ce8753817cd2551dac8738de35d0 | |
| parent | d29ef85d44fff9414932d64850f65cb268b1cddd (diff) | |
| download | genenetwork3-ee200d60bd3065c4c9e69bcbb756715211b711d2.tar.gz | |
Return only values
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* Return the values from the database, not the tuples.
| -rw-r--r-- | gn3/db/correlations.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index 898de75..05c0809 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -399,12 +399,12 @@ def fetch_sample_ids( "AND Species.name=%(species_name)s") with conn.cursor() as cursor: cursor.execute( - return cursor.fetchall() query, { "samples_names": tuple(sample_names), "species_name": species_name }) + return tuple(row[0] for row in cursor.fetchall()) def build_query_sgo_lit_corr( db_type: str, temp_table: str, sample_id_columns: str, |