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| author | Alexander_Kabui | 2022-07-07 23:13:14 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-07-22 14:52:08 +0300 |
| commit | 10256824e545d8e4115286389ef38f2d2c9735e1 (patch) | |
| tree | 8bde325d3a280e19b1fff0057fe2491ee082719e | |
| parent | 0c13d30e7008ff8285e33c39316211b48dc82ca1 (diff) | |
| download | genenetwork3-10256824e545d8e4115286389ef38f2d2c9735e1.tar.gz | |
mypy pylint fixes
| -rw-r--r-- | gn3/computations/rust_correlation.py | 3 | ||||
| -rw-r--r-- | tests/unit/computations/test_rust_correlation.py | 4 |
2 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index 0cd3ee2..0b37144 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -31,7 +31,8 @@ def generate_input_files(dataset: list[str], return (tmp_dir, tmp_file) -def generate_json_file(tmp_dir, tmp_file, method, delimiter, x_vals) -> str: +def generate_json_file(tmp_dir, tmp_file, + method, delimiter, x_vals) -> tuple[str, str]: """generating json input file required by cargo""" tmp_json_file = os.path.join(tmp_dir, f"{random_string(10)}.json") diff --git a/tests/unit/computations/test_rust_correlation.py b/tests/unit/computations/test_rust_correlation.py index 7c284ed..0fd8e94 100644 --- a/tests/unit/computations/test_rust_correlation.py +++ b/tests/unit/computations/test_rust_correlation.py @@ -68,9 +68,6 @@ def test_parse_results(): "num_overlap": 00, "p_value": p_val}} for (trait, corr_coeff, p_val) in raw_data] - expected_results = [{"trait_name": name, "corr_coeff": corr, - "p_val": pval} for (name, corr, pval) in raw_data] - assert (parse_correlation_output( "tests/unit/computations/data/correlation/sorted_results.txt", len(raw_data)) @@ -122,7 +119,6 @@ def test_get_samples(): } - exluded = ["BXD", "BXD11"] assert get_samples(all_samples=al_samples, base_samples=["BXD", "BXD4", "BXD5", "BXD6", "BXD11" |