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| author | Alexander Kabui | 2021-05-15 01:05:48 +0300 |
|---|---|---|
| committer | Alexander Kabui | 2021-05-15 01:05:48 +0300 |
| commit | bcba700bd2835f0a36042d781860b3407519f6d8 (patch) | |
| tree | 1ef75b4f8158e7d0424cc3d3ad37e4848b82e3c9 | |
| parent | 0f2b3be58b8265858d17581b85cab5ac4f13e097 (diff) | |
| download | genenetwork3-bcba700bd2835f0a36042d781860b3407519f6d8.tar.gz | |
index lit tuple result
| -rw-r--r-- | gn3/computations/correlations.py | 2 | ||||
| -rw-r--r-- | tests/unit/computations/test_correlation.py | 2 |
2 files changed, 2 insertions, 2 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index d496cec..4fdf8cf 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -257,7 +257,7 @@ def fetch_lit_correlation_data( cursor.execute(query_formatter(query, *tuple(reversed(query_values)))) lit_corr_results = cursor.fetchone() - lit_results = (gene_id, lit_corr_results.val)\ + lit_results = (gene_id, lit_corr_results[1])\ if lit_corr_results else (gene_id, 0) return lit_results diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py index 52c1f85..d264738 100644 --- a/tests/unit/computations/test_correlation.py +++ b/tests/unit/computations/test_correlation.py @@ -276,7 +276,7 @@ class TestCorrelation(TestCase): input trait mouse gene id and mouse gene id """ - expected_db_results = [namedtuple("lit_coeff", "val")(x*0.1) + expected_db_results = [("val", x*0.1) for x in range(1, 4)] conn = DataBase(expected_results=expected_db_results) expected_results = ("1", 0.1) |