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| author | Frederick Muriuki Muriithi | 2022-08-10 09:51:39 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-08-10 09:51:39 +0300 |
| commit | c79b0a0e2bd4d174cfa35645436bd0bec04c1c4c (patch) | |
| tree | d6402b7100f9bf304d525b3ef401b02e45b4249c | |
| parent | 95c06b76b445b5138500a1a019274405cd8eeec5 (diff) | |
| download | genenetwork3-c79b0a0e2bd4d174cfa35645436bd0bec04c1c4c.tar.gz | |
code refactoring
| -rw-r--r-- | gn3/computations/rust_correlation.py | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index 246c059..23fdf42 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -67,13 +67,11 @@ def parse_correlation_output(result_file: str, def __parse_line__(line): (trait_name, corr_coeff, p_val, num_overlap) = line.rstrip().split(",") if corr_type == "sample": - return ( - trait_name, - { + return (trait_name, { "num_overlap": num_overlap, "corr_coefficient": corr_coeff, "p_value": p_val - }) + }) if corr_type == "tissue": return ( @@ -93,7 +91,6 @@ def parse_correlation_output(result_file: str, return [] - def get_samples(all_samples: dict[str, str], base_samples: list[str], excluded: list[str]): |