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authorAlexander Kabui2021-10-05 16:57:13 +0300
committerBonfaceKilz2021-10-25 14:16:21 +0300
commit84f5c8a4384f29dfcb187ac5eed43551860b182b (patch)
tree85f4016794ce24fbc405ddea42b6deb61acf0678
parent453570cbf22a92de72fa0401895c99a923831942 (diff)
downloadgenenetwork3-84f5c8a4384f29dfcb187ac5eed43551860b182b.tar.gz
fix issues serializing byte string
-rw-r--r--gn3/computations/wgcna.py9
1 files changed, 6 insertions, 3 deletions
diff --git a/gn3/computations/wgcna.py b/gn3/computations/wgcna.py
index 421e09c..4dd0985 100644
--- a/gn3/computations/wgcna.py
+++ b/gn3/computations/wgcna.py
@@ -33,8 +33,10 @@ def stream_cmd_output(socket, cmd: str):
for line in iter(results.stdout.readline, b""):
line = line.decode("utf-8").rstrip()
+ # xtodo emit the data
-def process_image(image_loc: str) ->bytes:
+
+def process_image(image_loc: str) -> bytes:
"""encode the image"""
try:
@@ -65,8 +67,9 @@ def call_wgcna_script(rscript_path: str, request_data: dict):
with open(generated_file, "r") as outputfile:
output_file_data = json.load(outputfile)
- output_file_data["image_data"] = process_image(
- output_file_data["output"]["imageLoc"])
+ # json format only supports unicode string// to get image data reconvert
+ output_file_data["output"]["image_data"] = process_image(
+ output_file_data["output"]["imageLoc"]).decode("ascii")
if run_cmd_results["code"] != 0:
return run_cmd_results