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| author | Frederick Muriuki Muriithi | 2022-08-12 13:46:26 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-08-12 13:46:26 +0300 |
| commit | 6db3b2af8fc09999996d3acc09890a06f179c669 (patch) | |
| tree | 2fc514302e5be7a1c9f7dc8648037b042ed04b2c | |
| parent | a0c3b3ce30d508376b2aa9ddfee4252fca6916ac (diff) | |
| download | genenetwork3-6db3b2af8fc09999996d3acc09890a06f179c669.tar.gz | |
Add mandatory/expected fields to parsed data.
| -rw-r--r-- | gn3/computations/rust_correlation.py | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index 7176284..357b3cc 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -79,7 +79,11 @@ def parse_correlation_output(result_file: str, { "tissue_corr": corr_coeff, "tissue_number": num_overlap, - "tissue_p_val": p_val + "tissue_p_val": p_val, + # The fields below are mandatory + "p_value": p_val, + "num_overlap": num_overlap, + "corr_coefficient": corr_coeff }) return tuple(trait_name, {}) |