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| author | Alexander_Kabui | 2022-07-08 15:13:12 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-07-22 14:52:08 +0300 |
| commit | 5ad7a862dfa4d53fac9ddf7fd86075faa5167df5 (patch) | |
| tree | cc2b98885e1f0e443fdb04a2a66b0fbc47fb5363 | |
| parent | 3b6b25ab0c0410db9cb32c787b87e1a60dc02803 (diff) | |
| download | genenetwork3-5ad7a862dfa4d53fac9ddf7fd86075faa5167df5.tar.gz | |
fix for bug splitting list data
| -rw-r--r-- | gn3/computations/rust_correlation.py | 9 |
1 files changed, 3 insertions, 6 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index d206065..4438d79 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -84,10 +84,6 @@ def parse_correlation_output(result_file: str, top_n: int = 500) -> list[dict]: corr_results = [] - breakpoint() - - - with open(result_file, "r", encoding="utf-8") as file_reader: lines = [next(file_reader) for x in range(top_n)] @@ -164,9 +160,10 @@ def parse_tissue_corr_data(symbol_name: str, try: corr_vals = dataset_vals.get(symbol.lower()) - corr_vals.insert(0, trait) + if corr_vals: + corr_vals = [str(trait)] + corr_vals - data.append(",".join([str(val) for val in corr_vals])) + data.append(",".join([str(x) for x in corr_vals])) except Exception as e: pass |