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| author | zsloan | 2021-08-28 00:47:39 +0000 |
|---|---|---|
| committer | zsloan | 2021-08-28 00:47:39 +0000 |
| commit | 79d19f4ce5cdce7f78128e8d7321dfa701e1d04b (patch) | |
| tree | 527e36b9c906d5e41e858744c98f95d7fdd5de33 | |
| parent | 14d0a6649f6ecbb374a24f37efcd3a73982cf4c2 (diff) | |
| download | genenetwork3-79d19f4ce5cdce7f78128e8d7321dfa701e1d04b.tar.gz | |
Fix issue that caused R/qtl to not use the first covariate when using stratified permutations + covariates
| -rw-r--r-- | scripts/rqtl_wrapper.R | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/rqtl_wrapper.R b/scripts/rqtl_wrapper.R index f6788c5..7518175 100644 --- a/scripts/rqtl_wrapper.R +++ b/scripts/rqtl_wrapper.R @@ -167,7 +167,7 @@ if (!is.null(opt$addcovar)) { if (!is.null(opt$pstrata)) { covar_names = trait_names[3:length(trait_names) - 1] } else { - covar_names = trait_names[3:length(trait_names)] + covar_names = trait_names[2:length(trait_names)] } covars <- pull.pheno(cross_object, covar_names) } |