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authorFrederick Muriuki Muriithi2022-11-08 16:40:55 +0300
committerFrederick Muriuki Muriithi2022-11-08 16:40:55 +0300
commit3a44dd8750a212b5ed26cb0882dd1ad3dc3085d6 (patch)
treefb1b9be7e703347cb237c25f18ec65ff5e653545
parentd5980f1daef38fe831a2113c4eeccf5bcca4388d (diff)
downloadgenenetwork3-3a44dd8750a212b5ed26cb0882dd1ad3dc3085d6.tar.gz
Migrations: Init `resource_categories` with initial categories
* migrations/auth/20221108_04_CKcSL-init-data-in-resource-categories-table.py: new migration. * tests/unit/auth/test_migration_init_data_in_resource_categories_table.py: test new migration.
-rw-r--r--migrations/auth/20221108_04_CKcSL-init-data-in-resource-categories-table.py25
-rw-r--r--tests/unit/auth/test_migration_init_data_in_resource_categories_table.py28
2 files changed, 53 insertions, 0 deletions
diff --git a/migrations/auth/20221108_04_CKcSL-init-data-in-resource-categories-table.py b/migrations/auth/20221108_04_CKcSL-init-data-in-resource-categories-table.py
new file mode 100644
index 0000000..76ffbef
--- /dev/null
+++ b/migrations/auth/20221108_04_CKcSL-init-data-in-resource-categories-table.py
@@ -0,0 +1,25 @@
+"""
+Init data in resource_categories table
+"""
+
+from yoyo import step
+
+__depends__ = {'20221108_03_Pbhb1-create-resource-categories-table'}
+
+steps = [
+ step(
+ """
+ INSERT INTO resource_categories VALUES
+ ('fad071a3-2fc8-40b8-992b-cdefe7dcac79', 'mrna', 'mRNA Dataset'),
+ ('548d684b-d4d1-46fb-a6d3-51a56b7da1b3', 'phenotype', 'Phenotype (Publish) Dataset'),
+ ('48056f84-a2a6-41ac-8319-0e1e212cba2a', 'genotype', 'Genotype Dataset')
+ """,
+ """
+ DELETE FROM resource_categories WHERE resource_category_id IN
+ (
+ 'fad071a3-2fc8-40b8-992b-cdefe7dcac79',
+ '548d684b-d4d1-46fb-a6d3-51a56b7da1b3',
+ '48056f84-a2a6-41ac-8319-0e1e212cba2a'
+ )
+ """)
+]
diff --git a/tests/unit/auth/test_migration_init_data_in_resource_categories_table.py b/tests/unit/auth/test_migration_init_data_in_resource_categories_table.py
new file mode 100644
index 0000000..4b5a039
--- /dev/null
+++ b/tests/unit/auth/test_migration_init_data_in_resource_categories_table.py
@@ -0,0 +1,28 @@
+"""
+Test that the `resource_categories` table is initialised with the startup data.
+"""
+from contextlib import closing
+
+import pytest
+import sqlite3
+
+from gn3.migrations import get_migration, apply_migrations, rollback_migrations
+from tests.unit.auth.conftest import (
+ apply_single_migration, rollback_single_migration, migrations_up_to)
+
+migration_path = "migrations/auth/20221108_04_CKcSL-init-data-in-resource-categories-table.py"
+
+@pytest.mark.unit_test
+def test_apply_init_data(auth_testdb_path, auth_migrations_dir, backend):
+ older_migrations = migrations_up_to(migration_path, auth_migrations_dir)
+ the_migration = get_migration(migration_path)
+ apply_migrations(backend, older_migrations)
+ with closing(sqlite3.connect(auth_testdb_path)) as conn, closing(conn.cursor()) as cursor:
+ cursor.execute("SELECT * FROM resource_categories")
+ assert len(cursor.fetchall()) == 0, "Expected empty table."
+ apply_single_migration(auth_testdb_path, the_migration)
+ cursor.execute("SELECT * FROM resource_categories")
+ results = cursor.fetchall()
+ assert len(results) == 3, "Expected 3 rows of data."
+
+ rollback_migrations(backend, older_migrations + [the_migration])